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[178424_at]

Description T27C5.6 /REP_DB=WormBase Gene ID /WP=CE16500 /TR=O45850 /GB=CAB04867.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 48      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.9
(-0.7)
A 		15.4
(0.4)
A 		21.1
(3)
A 		7.7
(-3)
A 		13
B 4.2
(-2.5)
A 		3.9
(-3)
A 		4.1
(-2.7)
A 		7.5
(3)
A 		4
C 3.7
(0.9)
A 		1.9
(-3)
A 		4.5
(2.6)
A 		4.7
(3)
A 		3
avr 6.9
(-2.5) 		7.1
(-2.1) 		9.9
(3) 		6.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.7
(0.2)
A 		6.7
(-0.4)
A 		12.2
(3)
A 		2.4
(-3)
A 		4.8
(-1.5)
A 		4.4
(-1.8)
A 		10
B 3.8
(-1.3)
A 		1.8
(-3)
A 		2.2
(-2.7)
A 		4.8
(-0.5)
A 		8.8
(2.8)
A 		9
(3)
A 		7
C 4.2
(-2.9)
A 		7.5
(-1.7)
A 		3.8
(-3)
A 		17.9
(1.8)
A 		21.3
(3)
A 		6.8
(-2)
A 		18
avr 5.2
(-3) 		5.3
(-2.9) 		6.1
(-2.2) 		8.4
(0) 		11.6
(3) 		6.7
(-1.6) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.7
(1.9)
A 		3.4
(0.1)
A 		5.5
(3)
A 		1.1
(-3)
A 		4
B 1.3
(0.4)
A 		1
(-2.1)
A 		0.9
(-3)
A 		1.6
(3)
A 		1
C 1.2
(0.8)
A 		0.5
(-3)
A 		1.6
(3)
A 		0.8
(-1.4)
A 		1
avr 2.4
(1.8) 		1.6
(-1.4) 		2.7
(3) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.4
(-0.7)
A 		2.4
(2.1)
A 		2.7
(3)
A 		0.6
(-3)
A 		1.5
(-0.4)
A 		1.1
(-1.6)
A 		2
B 1.3
(-1.5)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		1.3
(-1.5)
A 		3.6
(3)
A 		3.3
(2.4)
A 		3
C 1.6
(-2.4)
A 		2.3
(-1.7)
A 		1
(-3)
A 		3.6
(-0.4)
A 		6.9
(3)
A 		2.3
(-1.7)
A 		6
avr 1.4
(-3) 		1.8
(-2.1) 		1.4
(-3) 		1.8
(-2.1) 		4
(3) 		2.2
(-1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14142
Sequence Type Exemplar sequence
Representative Public ID T27C5.6 NCBI
Target Description T27C5.6 /REP_DB=WormBase Gene ID /WP=CE16500 /TR=O45850 /GB=CAB04867.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030294 ENSEMBL cdna:SNAP chromosome:CEL140:V:17415179:17415600:-1 11/11 None
T27C5.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17415179:17415675:-1 gene:T27C5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17415178-17415600(-) 100.0 100.0
Public Domain and Genome References
Ensembl T27C5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25349 hypothetical protein T27C5.6 - Caenorhabditis elegans 7.0E-64
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 5.0E-61
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 1.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.6E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030294 2 42-64,76-98
Sequence
Target Sequence 
>C. ELEGANS:178424_AT
gtgtttgtcaacactgacctgattcgcttgatggtccgattgaagccccaaatctcaccg
cagaactaccaaaaacacgtggaggctattcaaagcctaattgttcagatgttcgtcgcc
ggtctgtgtgcgctgccactgttcggtgtgaccttcgttctagcttttcaactcgagaat
ggacaatttattgcgagaatcatgtttgtgctgtggacctgtcattctacaataaacatg
atttctatgttcattttctttccgccatatcgccgatacttgttcaaaaagttgagaata
aatcggcgtagtctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTTGTCAACACTGACCTGATTC 407 485 37 Antisense
AAAACACGTGGAGGCTATTCAAAGC 578 129 108 Antisense
GCTATTCAAAGCCTAATTGTTCAGA 62 305 121 Antisense
TAATTGTTCAGATGTTCGTCGCCGG 113 635 134 Antisense
ATTGCGAGAATCATGTTTGTGCTGT 166 7 226 Antisense
ATCATGTTTGTGCTGTGGACCTGTC 549 29 235 Antisense
TGTGCTGTGGACCTGTCATTCTACA 615 555 243 Antisense
ATTTCTATGTTCATTTTCTTTCCGC 148 17 277 Antisense
TTCCGCCATATCGCCGATACTTGTT 253 697 296 Antisense
CATATCGCCGATACTTGTTCAAAAA 608 213 302 Antisense
GAGAATAAATCGGCGTAGTCTCTTC 474 391 330 Antisense
Sequence Source Affymetrix Proprietary Database