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[178423_at] 7TM chemoreceptor, srw family

Description ZK262.6 /REP_DB=WormBase Gene ID /WP=CE19324 /TR=Q9XTR6 /GB=CAB16548.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 18      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 35.1
(-3)
A 		41.6
(-2.4)
A 		61.6
(-0.7)
P 		105.6
(3)
P 		71
B 51.6
(-3)
A 		68.1
(0.7)
M 		60.8
(-0.9)
P 		78.2
(3)
P 		27
C 45.7
(-2.6)
A 		99.9
(1.7)
P 		40.4
(-3)
P 		116.7
(3)
P 		76
avr 44.1
(-3) 		69.9
(-0.2) 		54.3
(-1.9) 		100.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 60.9
(0.8)
P 		56.7
(0.4)
A 		64.2
(1)
A 		63.5
(0.9)
A 		11.7
(-3)
A 		90.4
(3)
P 		79
B 75.6
(1)
A 		63
(-0.4)
M 		62.6
(-0.5)
A 		93.1
(3)
P 		40.5
(-3)
A 		47.3
(-2.2)
P 		53
C 21.5
(-2.6)
P 		35.7
(-1.2)
A 		54
(0.6)
A 		78.1
(3)
P 		28.9
(-1.9)
P 		17.9
(-3)
A 		60
avr 52.7
(0) 		51.8
(-0.1) 		60.3
(0.9) 		78.2
(3) 		27
(-3) 		51.9
(-0.1) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.8
(0.2)
A 		9
(-3)
A 		16.1
(3)
P 		15.5
(2.5)
P 		7
B 16.4
(2.1)
A 		16.8
(3)
M 		14.1
(-3)
P 		16.7
(2.8)
P 		3
C 15.1
(-2.6)
A 		28.7
(3)
P 		14.1
(-3)
P 		19.7
(-0.7)
P 		15
avr 14.8
(-3) 		18.2
(3) 		14.8
(-3) 		17.3
(1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.2
(-0.5)
P 		20.2
(2.4)
A 		14
(0.4)
A 		16.1
(1.1)
A 		3.5
(-3)
A 		22
(3)
P 		19
B 26.3
(3)
A 		21
(0.1)
M 		15.2
(-3)
A 		24.7
(2.1)
P 		16.5
(-2.3)
A 		17.6
(-1.7)
P 		11
C 8
(-1.8)
P 		10.9
(0)
A 		13.7
(1.8)
A 		15.7
(3)
P 		9.4
(-0.9)
P 		6
(-3)
A 		10
avr 15.2
(0.6) 		17.4
(2.1) 		14.3
(0) 		18.8
(3) 		9.8
(-3) 		15.2
(0.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14575
Sequence Type Exemplar sequence
Representative Public ID ZK262.6 NCBI
Target Description ZK262.6 /REP_DB=WormBase Gene ID /WP=CE19324 /TR=Q9XTR6 /GB=CAB16548.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075205(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075205 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-83) (srw-83) mRNA, complete cds. 10/11 None
ZK262.6 ENSEMBL cdna:known chromosome:CEL140:V:18429154:18433111:1 gene:ZK262.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013663 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18429153-18433111(+) 96.52 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-83
Ensembl ZK262.6
Entrez Gene 266935 Entrez gene
SwissProt Q9XTR6 EMBL-EBI
WormBase CE29012 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16548 Hypothetical protein ZK262.6 [Caenorhabditis elegans] ref|NP_507606.1| Serpentine Receptor, class W family member (srw-83) [Caenorhabditis elegans] 0.0
blast CAB16549 Hypothetical protein ZK262.7 [Caenorhabditis elegans] ref|NP_507608.1| Serpentine Receptor, class W family member (srw-82) [Caenorhabditis elegans] 2.0E-83
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 1.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507606.1 7 22-44,57-79,110-127,144-166,197-219,240-262,277-299
ZK262.6 7 22-44,57-79,110-127,144-166,197-219,240-262,277-299
Sequence
Target Sequence 
>C. ELEGANS:178423_AT
cctggagcaaactgcaccggattcccagccaagtacagtgaacccaattacaaccgggta
aagaagaaaaatcaactaattcctacagatgtgtatgaggtttttacagcaagctctgat
gcaagttttcaatgtggtgcatttttattcacatacagtgtgggaaagttctataggacc
ccccctaatttgaagattctgattgccgcactttacccaattttcggcttattgttgatg
tttgaagtgttgaaagcagccaaagttgcgtcaactatgctcagcagaaaagatgcggtg
gagagataccacacaagccgaatgatactcgttatgacgattttctatatgctcgccagt
tgtcttactggcacctacaaattcgttaggcttattgtcgaaacaatctcatacacccac
ttcgatatgtacttcaatttgattcttgcgtattgttccaatttattctcagcactcttc
tgtgccaatgcattggcccatttcttgatcaatctctcaatgtcaaggaattatcggaat
gccgtaatggagctggggtgctgtcctagaaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGGAGCAAACTGCACCGGATTCC 419 265 541 Antisense
TCCCAGCCAAGTACAGTGAACCCAA 293 599 563 Antisense
GAAGATTCTGATTGCCGCACTTTAC 358 337 732 Antisense
AGTTGCGTCAACTATGCTCAGCAGA 371 65 804 Antisense
TCTATATGCTCGCCAGTTGTCTTAC 700 613 884 Antisense
GTCTTACTGGCACCTACAAATTCGT 707 461 902 Antisense
CACCCACTTCGATATGTACTTCAAT 129 201 954 Antisense
TGTTCCAATTTATTCTCAGCACTCT 195 563 994 Antisense
TCAGCACTCTTCTGTGCCAATGCAT 3 623 1009 Antisense
TTGGCCCATTTCTTGATCAATCTCT 637 707 1033 Antisense
AGCTGGGGTGCTGTCCTAGAAGGAA 367 81 1091 Antisense
Sequence Source Affymetrix Proprietary Database