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[178422_at]

Description C07B5.6 /REP_DB=WormBase Gene ID /WP=CE17374 /TR=O62038 /GB=CAA86413.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 9.1
(-3)
A 		19.7
(-0.4)
A 		12.8
(-2.1)
A 		33.7
(3)
A 		25
B 19.4
(3)
A 		6.2
(-2.7)
A 		16.5
(1.8)
A 		5.4
(-3)
A 		14
C 7.2
(-2.4)
A 		2.7
(-3)
A 		14.8
(-1.3)
A 		46.1
(3)
P 		43
avr 11.9
(-2.2) 		9.5
(-3) 		14.7
(-1.3) 		28.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 4.4
(-2.2)
A 		0.8
(-3)
A 		25.6
(2.8)
A 		9.8
(-0.9)
A 		26.3
(3)
A 		5.1
(-2)
A 		26
B 4.1
(-3)
A 		4
(-3)
A 		26.3
(1.1)
A 		36.7
(3)
A 		18.3
(-0.4)
A 		33.5
(2.4)
A 		33
C 13.9
(-1.6)
A 		32.5
(3)
A 		8.4
(-3)
A 		10.5
(-2.5)
A 		10.5
(-2.5)
A 		29.3
(2.2)
A 		24
avr 7.5
(-3) 		12.4
(-1.1) 		20.1
(2) 		19
(1.6) 		18.4
(1.3) 		22.6
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.3
(-3)
A 		4.3
(0.7)
A 		3.3
(-3)
A 		4.9
(3)
A 		2
B 6.2
(3)
A 		1.5
(-2.6)
A 		3.8
(0.1)
A 		1.2
(-3)
A 		5
C 2.4
(-1.6)
A 		0.8
(-3)
A 		5.2
(0.8)
A 		7.8
(3)
P 		7
avr 4
(1.5) 		2.2
(-3) 		4.1
(1.8) 		4.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-2.6)
A 		0.3
(-3)
A 		5.6
(1.2)
A 		2.5
(-1.3)
A 		7.9
(3)
A 		1.2
(-2.3)
A 		8
B 1.4
(-2.9)
A 		1.3
(-3)
A 		6.4
(-0.3)
A 		9.7
(1.5)
A 		7.4
(0.3)
A 		12.5
(3)
A 		11
C 5.2
(-0.6)
A 		9.9
(3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		3.4
(-2)
A 		9.8
(2.9)
A 		8
avr 2.5
(-3) 		3.8
(-1.5) 		4.7
(-0.5) 		4.8
(-0.4) 		6.2
(1.2) 		7.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16020
Sequence Type Exemplar sequence
Representative Public ID C07B5.6 NCBI
Target Description C07B5.6 /REP_DB=WormBase Gene ID /WP=CE17374 /TR=O62038 /GB=CAA86413.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077200 NCBI Caenorhabditis elegans C07B5.6 (C07B5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005690 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9518954:9521223:1 11/11 None
C07B5.6 ENSEMBL cdna:known chromosome:CEL140:X:9518954:9521418:1 gene:C07B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9518953-9521223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07B5.6
Entrez Gene 181173 Entrez gene
SwissProt O62038 EMBL-EBI
WormBase CE17374 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86413 Hypothetical protein C07B5.6 [Caenorhabditis elegans] ref|NP_509601.1| C07B5.6 [Caenorhabditis elegans] 6.0E-88
blast CAE69806 Hypothetical protein CBG16116 [Caenorhabditis briggsae] 3.0E-43
Sequence
Target Sequence 
>C. ELEGANS:178422_AT
aaatggagcttcaacctcatcacactcccatcttccgactcttcctgagagtgcagagaa
tgatgtttctcactcagaaggtttggaatttggagagatgaactctgctgagtacacaag
ttctagttatatttcgtttggtgaacccgtgtttacaacaaacattcttgtcaatcagcc
taattgcattgaccaatcggtaatggaagcatctcaaaattttaacactttcaattaccc
tgtgtttaaaaaatacggatattatatcgacggcgtttattacacaatggtaaaaaaagg
atcaacgcgacaacgagtaaaatgtttgtatcgccgaggaattccacgtttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGAGCTTCAACCTCATCACAC 387 121 42 Antisense
TCTTCCGACTCTTCCTGAGAGTGCA 578 617 72 Antisense
GAATGATGTTTCTCACTCAGAAGGT 573 331 99 Antisense
CTCTGCTGAGTACACAAGTTCTAGT 571 229 144 Antisense
AACATTCTTGTCAATCAGCCTAATT 624 137 202 Antisense
AGCCTAATTGCATTGACCAATCGGT 327 83 218 Antisense
TTTTAACACTTTCAATTACCCTGTG 414 1 261 Antisense
ATCGACGGCGTTTATTACACAATGG 269 37 307 Antisense
AAAGGATCAACGCGACAACGAGTAA 407 121 337 Antisense
GTAAAATGTTTGTATCGCCGAGGAA 663 461 358 Antisense
ATCGCCGAGGAATTCCACGTTTGGA 500 37 371 Antisense
Sequence Source Affymetrix Proprietary Database