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[178420_at]

Description F11A5.5 /REP_DB=WormBase Gene ID /WP=CE15783 /TR=O17784 /GB=CAB07352.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 4.4
(-3)
A 		21.9
(-0.4)
A 		44.5
(3)
P 		31.7
(1.1)
A 		40
B 20
(-3)
A 		48.4
(0.2)
P 		41.6
(-0.6)
P 		73.4
(3)
P 		53
C 34.1
(-0.3)
A 		15.5
(-3)
A 		21.1
(-2.2)
P 		56.1
(3)
A 		41
avr 19.5
(-3) 		28.6
(-1.4) 		35.7
(-0.2) 		53.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 14
(-1.8)
A 		62.5
(3)
P 		60
(2.8)
P 		55.6
(2.3)
M 		27.4
(-0.5)
A 		1.9
(-3)
A 		61
B 22.1
(-3)
A 		54.7
(1.7)
P 		63.4
(3)
P 		30
(-1.9)
A 		53.9
(1.6)
P 		24.5
(-2.7)
A 		41
C 16.7
(-2.8)
A 		78.6
(3)
P 		14.2
(-3)
A 		16
(-2.8)
A 		19.2
(-2.5)
A 		22.8
(-2.2)
P 		64
avr 17.6
(-2.9) 		65.3
(3) 		45.9
(0.6) 		33.9
(-0.9) 		33.5
(-0.9) 		16.4
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.6
(-3)
A 		4.8
(-1.1)
A 		11.6
(3)
P 		4.6
(-1.2)
A 		10
B 6.4
(-3)
A 		12
(0.7)
P 		9.6
(-0.9)
P 		15.6
(3)
P 		9
C 11.3
(3)
A 		4.5
(-3)
A 		7.4
(-0.4)
P 		9.5
(1.4)
A 		7
avr 6.4
(-3) 		7.1
(-1.8) 		9.5
(2.3) 		9.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.6
(-2.4)
A 		22.2
(3)
P 		13.1
(0.5)
P 		14.1
(0.8)
M 		8.3
(-0.8)
A 		0.5
(-3)
A 		22
B 7.7
(-3)
A 		18.2
(1.4)
P 		15.4
(0.3)
P 		7.9
(-2.9)
A 		21.9
(3)
P 		9.1
(-2.4)
A 		14
C 6.2
(-2.1)
A 		24
(3)
P 		3.6
(-2.9)
A 		3.2
(-3)
A 		6.2
(-2.1)
A 		7.6
(-1.7)
P 		21
avr 5.5
(-3) 		21.5
(3) 		10.7
(-1.1) 		8.4
(-1.9) 		12.1
(-0.5) 		5.7
(-2.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14143
Sequence Type Exemplar sequence
Representative Public ID F11A5.5 NCBI
Target Description F11A5.5 /REP_DB=WormBase Gene ID /WP=CE15783 /TR=O17784 /GB=CAB07352.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074684 NCBI Caenorhabditis elegans F11A5.5 (F11A5.5) mRNA, complete cds. 11/11 None
SNAP00000026997 ENSEMBL cdna:SNAP chromosome:CEL140:V:16201649:16203612:1 11/11 None
GENEFINDER00000027012 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16201033:16205323:1 11/11 None
F11A5.5 ENSEMBL cdna:known chromosome:CEL140:V:16201033:16203612:1 gene:F11A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16201032-16203612(+) 99.91 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A5.5
Entrez Gene 184332 Entrez gene
SwissProt O17784 EMBL-EBI
WormBase CE15783 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07352 Hypothetical protein F11A5.5 [Caenorhabditis elegans] ref|NP_507085.1| F11A5.5 [Caenorhabditis elegans] 0.0
blast CAE61108 Hypothetical protein CBG04865 [Caenorhabditis briggsae] 1.0E-151
blast CAB07352 Hypothetical protein F11A5.5 [Caenorhabditis elegans] ref|NP_507085.1| F11A5.5 [Caenorhabditis elegans] 1.0E-148
blast CAE61108 Hypothetical protein CBG04865 [Caenorhabditis briggsae] 1.0E-103
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 4.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 1.2E-6
Pfam IPR002516 EMBL-EBI Glycosyl transferase, family 11 1.2E-6
Sequence
Target Sequence 
>C. ELEGANS:178420_AT
acatcttacagggactcattatcagagttggaagtacttttcgcacatgagaaatgagtt
aattgggtacttaaaaactaccgaaaacacctatatggatttgccgaaatctggagagaa
cacttttataacatgtgtccacgttcgacgtggtgattttctccgagtgggattccacgt
ggcagatgaaaattttattcgaagctcgttgaatttaatttctcgacaagttgcaaaacg
agccaacacagcgacagtattcttcggtgacgattatgaatttatggatagtctgagaaa
tcgaacatccaaaatcaacgcgtttgtatcacaaaattcaccagccgacgacttattata
cgcaaagtcgaattgtgatgtcgtacttattacagccgcccattcaacatttggctggtg
gatgggatatttttccaaaggaaatcgggtgtattacactgacattcaatttactaaaga
ttggattttggaaactggagagttcatttccgaagactactacttgccccactggacgcc
tcttaaatatgccggttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCTTACAGGGACTCATTATCAG 196 107 513 Antisense
GTTGGAAGTACTTTTCGCACATGAG 256 435 539 Antisense
ATAACATGTGTCCACGTTCGACGTG 513 19 640 Antisense
CGACGTGGTGATTTTCTCCGAGTGG 571 251 658 Antisense
CTCCGAGTGGGATTCCACGTGGCAG 695 231 673 Antisense
GCAAAACGAGCCAACACAGCGACAG 290 317 745 Antisense
ACAGCGACAGTATTCTTCGGTGACG 138 107 760 Antisense
GTATCACAAAATTCACCAGCCGACG 110 455 838 Antisense
TGATGTCGTACTTATTACAGCCGCC 350 567 888 Antisense
CATTTCCGAAGACTACTACTTGCCC 343 215 1017 Antisense
GGACGCCTCTTAAATATGCCGGTTC 542 523 1046 Antisense
Sequence Source Affymetrix Proprietary Database