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[178419_at] 7TM chemoreceptor, srw family

Description T26H5.5 /REP_DB=WormBase Gene ID /WP=CE18293 /TR=O62381 /GB=CAB03410.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      4grp_high_8_8 > 20      6grp_total > 53      4grp_total > 20      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 61.4
(3)
P 		42.8
(-0.9)
A 		32.9
(-3)
A 		60.6
(2.8)
P 		29
B 73.5
(1.9)
P 		66.1
(-0)
P 		54.6
(-3)
M 		77.9
(3)
P 		23
C 86.5
(-1.5)
P 		102.6
(-0.5)
P 		61.3
(-3)
P 		159.9
(3)
P 		99
avr 73.8
(-0.1) 		70.5
(-0.5) 		49.6
(-3) 		99.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 56.7
(-3)
P 		66.4
(-1.9)
P 		108.9
(3)
P 		82.5
(-0)
P 		86.5
(0.4)
P 		64.2
(-2.1)
P 		52
B 52.9
(-3)
M 		79.9
(-0.2)
P 		110.9
(3)
P 		91.5
(1)
P 		53.4
(-2.9)
P 		82.4
(0.1)
P 		58
C 76
(-1.2)
P 		89.2
(0.2)
P 		115
(3)
P 		75.6
(-1.3)
P 		60.2
(-2.9)
P 		59.5
(-3)
P 		56
avr 61.9
(-3) 		78.5
(-1) 		111.6
(3) 		83.2
(-0.4) 		66.7
(-2.4) 		68.7
(-2.2) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 22.3
(3)
P 		9.3
(-2.7)
A 		8.6
(-3)
A 		8.9
(-2.9)
P 		14
B 23.4
(3)
P 		16.3
(-1)
P 		12.7
(-3)
M 		16.6
(-0.8)
P 		11
C 28.6
(2.3)
P 		29.5
(3)
P 		21.4
(-3)
P 		27
(1.1)
P 		8
avr 24.8
(3) 		18.4
(-0.6) 		14.2
(-3) 		17.5
(-1.1) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.5
(-3)
P 		23.6
(2)
P 		23.7
(2.1)
P 		20.9
(1)
P 		26.1
(3)
P 		15.6
(-1)
P 		16
B 18.4
(-3)
M 		26.6
(1)
P 		26.9
(1.1)
P 		24.2
(-0.2)
P 		21.7
(-1.4)
P 		30.7
(3)
P 		12
C 28.2
(2.5)
P 		27.2
(2.1)
P 		29.3
(3)
P 		15.2
(-3)
P 		19.5
(-1.2)
P 		19.9
(-1)
P 		14
avr 19
(-3) 		25.8
(2.4) 		26.6
(3) 		20.1
(-2.1) 		22.4
(-0.3) 		22.1
(-0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178419_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13110
Sequence Type Exemplar sequence
Representative Public ID T26H5.5 NCBI
Target Description T26H5.5 /REP_DB=WormBase Gene ID /WP=CE18293 /TR=O62381 /GB=CAB03410.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074443 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-33) (srw-33) mRNA, complete cds. 11/11 None
GENEFINDER00000015507 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15450225:15452992:-1 10/11 None
T26H5.5 ENSEMBL cdna:known chromosome:CEL140:V:15452216:15454106:-1 gene:T26H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15452215-15454106(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-33
Ensembl T26H5.5
Entrez Gene 188958 Entrez gene
SwissProt O62381 EMBL-EBI
WormBase CE18293 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 0.0
blast CAB03410 Hypothetical protein T26H5.5 [Caenorhabditis elegans] emb|CAB04856.1| Hypothetical protein T26H5.5 [Caenorhabditis elegans] ref|NP_506844.1| Serpentine Receptor, class W family member (srw-33) [Caenorhabditis elegans] 3.0E-94
blast CAE17807 Hypothetical protein F36D3.13 [Caenorhabditis elegans] ref|NP_001023883.1| Serpentine Receptor, class W family member (srw-34) [Caenorhabditis elegans] 2.0E-55
blast CAB05799 Hypothetical protein T08G3.10 [Caenorhabditis elegans] ref|NP_507166.2| Serpentine Receptor, class W family member (srw-35) [Caenorhabditis elegans] 2.0E-54
blast CAE17807 Hypothetical protein F36D3.13 [Caenorhabditis elegans] ref|NP_001023883.1| Serpentine Receptor, class W family member (srw-34) [Caenorhabditis elegans] 3.0E-25
blast CAB05799 Hypothetical protein T08G3.10 [Caenorhabditis elegans] ref|NP_507166.2| Serpentine Receptor, class W family member (srw-35) [Caenorhabditis elegans] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 7.6E-32
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 7.6E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506844.1 7 33-55,68-90,127-144,164-186,232-254,275-297,317-339
T26H5.5 7 33-55,68-90,127-144,164-186,232-254,275-297,317-339
GENEFINDER00000015507 4 13-35,82-104,125-147,167-189
Sequence
Target Sequence 
>C. ELEGANS:178419_AT
caattcaacctttcggatctctctgggtcccaccacaaaactgcaccgattttccgaaaa
actactttcaaatccaatatacctacgtagaaactcatattttcgaaaaatcaacagact
ttttgactggaatggaaggagtgctatacgttataataccatctattcttctgccaattt
ctacattaatattgatttttcaattgagaatatcgcggaaaaagtcagaagcattgagac
acacaagtaacagcggaggggatcgtaccaccaaactcgtgacatttatgacaatttcat
tcacaatttccacagctccatttggtattctacacttggtgaaagttattgtttctgaag
caatagggtctgaaggaatgaatttaatagtcgatcgaattgcctcactattccctctta
ttatcacaatcaacggcgccattcatttctttctttgctactttttatcatcacaatatc
gggacgctgttcgtgaaatgtttggaagaaataaaaagagtaaaaactcaatttcacttc
aacatcctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCAACCTTTCGGATCTCTCTG 457 179 563 Antisense
ACCACAAAACTGCACCGATTTTCCG 90 37 594 Antisense
TAATACCATCTATTCTTCTGCCAAT 334 635 716 Antisense
TAACAGCGGAGGGGATCGTACCACC 553 637 810 Antisense
GATCGTACCACCAAACTCGTGACAT 406 417 823 Antisense
AATTTCCACAGCTCCATTTGGTATT 542 173 867 Antisense
AGTCGATCGAATTGCCTCACTATTC 546 61 951 Antisense
CACTATTCCCTCTTATTATCACAAT 285 197 968 Antisense
CATTTCTTTCTTTGCTACTTTTTAT 329 215 1006 Antisense
TCACAATATCGGGACGCTGTTCGTG 509 627 1033 Antisense
TCAATTTCACTTCAACATCCTGCCA 44 635 1090 Antisense
Sequence Source Affymetrix Proprietary Database