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[178418_s_at]

Description F44F1.4 /REP_DB=WormBase Gene ID /WP=CE10418 /TR=O02263 /GB=CAB03104.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      6grp_total > 80      4grp_total > 31      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 205.4
(3)
P 		82.3
(-3)
A 		140.9
(-0.1)
A 		191.6
(2.3)
A 		123
B 216.9
(3)
P 		71.8
(-2.9)
A 		68.4
(-3)
A 		83.1
(-2.4)
A 		149
C 244.5
(3)
P 		104.5
(-2.2)
A 		84.1
(-3)
A 		203.5
(1.5)
A 		160
avr 222.3
(3) 		86.2
(-3) 		97.8
(-2.5) 		159.4
(0.2) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 209.8
(-0.8)
M 		211.5
(-0.7)
P 		156.2
(-2.6)
P 		315.9
(3)
P 		238.2
(0.3)
P 		146.2
(-3)
P 		170
B 133.4
(-3)
P 		167.6
(-0.5)
P 		157.1
(-1.3)
P 		215.2
(3)
P 		154.5
(-1.5)
P 		156
(-1.3)
P 		82
C 129
(-1.6)
M 		201.4
(1.5)
P 		182.7
(0.7)
P 		235.1
(3)
P 		97.5
(-3)
P 		157.9
(-0.4)
P 		138
avr 157.4
(-2.8) 		193.5
(-0.6) 		165.3
(-2.3) 		255.4
(3) 		163.4
(-2.4) 		153.4
(-3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 74.8
(3)
P 		17.9
(-3)
A 		36.8
(-1)
A 		28.1
(-1.9)
A 		57
B 69.2
(3)
P 		17.7
(-2.8)
A 		15.9
(-3)
A 		17.7
(-2.8)
A 		53
C 80.9
(3)
P 		30
(-2.9)
A 		29.3
(-3)
A 		34.3
(-2.4)
A 		52
avr 75
(3) 		21.9
(-3) 		27.3
(-2.4) 		26.7
(-2.5) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 38.7
(-2.4)
M 		75.2
(2.4)
P 		34
(-3)
P 		80.1
(3)
P 		71.9
(1.9)
P 		35.6
(-2.8)
P 		46
B 46.4
(-1)
P 		55.8
(1.3)
P 		38.1
(-3)
P 		57
(1.6)
P 		62.8
(3)
P 		58.2
(1.9)
P 		25
C 47.8
(0.3)
M 		61.5
(3)
P 		46.5
(-0)
P 		47.3
(0.2)
P 		31.6
(-3)
P 		52.9
(1.3)
P 		30
avr 44.3
(-1.8) 		64.2
(3) 		39.5
(-3) 		61.5
(2.3) 		55.4
(0.9) 		48.9
(-0.7) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178418_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.346
Sequence Type Exemplar sequence
Representative Public ID F44F1.4 NCBI
Target Description F44F1.4 /REP_DB=WormBase Gene ID /WP=CE10418 /TR=O02263 /GB=CAB03104.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060930 NCBI Caenorhabditis elegans F44F1.4 (F44F1.4) mRNA, complete cds. 11/11 None
SNAP00000015374 ENSEMBL cdna:SNAP chromosome:CEL140:I:13271922:13273689:-1 11/11 None
GENEFINDER00000015376 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13271922:13273689:-1 11/11 None
F44F1.4 ENSEMBL cdna:known chromosome:CEL140:I:13271922:13273719:-1 gene:F44F1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13271852-13273650(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44F1.4
Entrez Gene 173190 Entrez gene
SwissProt O02263 EMBL-EBI
WormBase CE10418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03104 Hypothetical protein F44F1.4 [Caenorhabditis elegans] ref|NP_493331.1| F44F1.4 [Caenorhabditis elegans] 0.0
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 1.0E-152
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 1.0E-151
blast F87986 protein F44F1.6 [imported] - Caenorhabditis elegans 1.0E-150
blast F87986 protein F44F1.6 [imported] - Caenorhabditis elegans 1.0E-149
Sequence
Target Sequence 
>C. ELEGANS:178418_S_AT
gttcttccagcagcaccggtgaagacatttgctgtgagaattcaagaagagaaacagaag
aagctggatgaagaggaacaacagaaggtgttgaagattcaagaactggagaaacaaaag
gatgaacaaattatgaaatcaatgttggaactggaagatatgaagaagttattggaagag
aaagatgagaagattctgatgcacgtgggtaaacaacgtgtcatgaaatttgatatggat
attctgaaaaataagttagacgaaagtattatgaaaataaaagaagcaaatgatcataat
ctggaattggagaaagcaaaactcatagcatttgaagcatcgagagaggagaaaaaacag
tatgacattctgaagaataccctgaaggagaaagaagatctgattgagaaattgaaggcc
caaatcgcggcgaaagatcaaaatcggcagcgcactcaaaacttcaatgctcacagcaat
cccatgttcggagttcagcctccagcgatgattgccgctaatccgtatgcatgcccatac
atcgtccaggtggacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCCAGCAGCACCGGTGAAGA 586 443 1105 Antisense
GAGAAGATTCTGATGCACGTGGGTA 6 393 1291 Antisense
ATTGAAGGCCCAAATCGCGGCGAAA 215 3 1515 Antisense
GATCAAAATCGGCAGCGCACTCAAA 469 421 1540 Antisense
CACTCAAAACTTCAATGCTCACAGC 454 197 1557 Antisense
TGCTCACAGCAATCCCATGTTCGGA 122 581 1572 Antisense
GCAATCCCATGTTCGGAGTTCAGCC 53 323 1580 Antisense
GGAGTTCAGCCTCCAGCGATGATTG 235 513 1594 Antisense
GATGATTGCCGCTAATCCGTATGCA 628 409 1611 Antisense
ATCCGTATGCATGCCCATACATCGT 335 39 1625 Antisense
GCCCATACATCGTCCAGGTGGACCA 295 285 1637 Antisense
Sequence Source Affymetrix Proprietary Database