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[178417_s_at]

Description W09C5.7 /REP_DB=WormBase Gene ID /WP=CE20170 /TR=Q9U330 /GB=CAB63333.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_high_8_8 > 41      6grp_highest_nonorm > 83      6grp_total > 38      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 468.6
(3)
P 		459.2
(2.7)
A 		383.3
(0.2)
P 		286.1
(-3)
M 		183
B 449.5
(3)
P 		383.5
(-0.8)
P 		345.5
(-3)
P 		346.3
(-3)
P 		104
C 491.9
(3)
P 		392.1
(-0.8)
P 		343.3
(-2.7)
P 		334.3
(-3)
P 		158
avr 470
(3) 		411.6
(0.6) 		357.4
(-1.6) 		322.2
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 480.7
(2.4)
P 		456.4
(1.7)
P 		296
(-3)
P 		446.3
(1.4)
P 		423.2
(0.7)
P 		502.9
(3)
P 		207
B 524.7
(3)
P 		424.5
(0.2)
P 		450.7
(0.9)
P 		313.6
(-3)
P 		435.8
(0.5)
P 		452.7
(1)
P 		211
C 500.8
(3)
P 		421.4
(-1.8)
P 		401.7
(-3)
P 		413.6
(-2.3)
P 		476.8
(1.5)
P 		463.5
(0.7)
P 		99
avr 502.1
(3) 		434.1
(-0.4) 		382.8
(-3) 		391.2
(-2.6) 		445.3
(0.1) 		473
(1.5) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 170.6
(3)
P 		99.7
(-0.3)
A 		100.2
(-0.3)
P 		41.9
(-3)
M 		129
B 143.3
(3)
P 		94.7
(-1.2)
P 		80.1
(-2.5)
P 		73.8
(-3)
P 		70
C 162.8
(3)
P 		112.7
(0.2)
P 		119.6
(0.6)
P 		56.4
(-3)
P 		106
avr 158.9
(3) 		102.4
(-0.3) 		100
(-0.5) 		57.4
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 88.6
(-1.5)
P 		162.3
(3)
P 		64.5
(-3)
P 		113.2
(-0)
P 		127.7
(0.9)
P 		122.5
(0.6)
P 		98
B 182.6
(3)
P 		141.3
(0.5)
P 		109.4
(-1.4)
P 		83.1
(-3)
P 		177
(2.7)
P 		168.8
(2.2)
P 		100
C 185.6
(3)
P 		128.6
(-0.3)
P 		102.2
(-1.9)
P 		83.2
(-3)
P 		154.3
(1.2)
P 		155.2
(1.2)
P 		102
avr 152.3
(2.9) 		144.1
(2.1) 		92
(-3) 		93.2
(-2.9) 		153
(3) 		148.8
(2.6) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178417_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2006
Sequence Type Exemplar sequence
Representative Public ID W09C5.7 NCBI
Target Description W09C5.7 /REP_DB=WormBase Gene ID /WP=CE20170 /TR=Q9U330 /GB=CAB63333.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060992 NCBI Caenorhabditis elegans W09C5.7 (W09C5.7) mRNA, complete cds. 11/11 A 
SNAP00000012969 ENSEMBL cdna:SNAP chromosome:CEL140:I:13662353:13666257:1 11/11 None
GENEFINDER00000013004 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13662353:13666257:1 11/11 None
W09C5.7 ENSEMBL cdna:known chromosome:CEL140:I:13662147:13666271:1 gene:W09C5.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13662283-13666188(+) 97.87 100.0
Public Domain and Genome References
Gene Title
Ensembl W09C5.7
Entrez Gene 173236 Entrez gene
SwissProt Q9U330 EMBL-EBI
WormBase CE20170 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.446.1.A1_AT similar to inositol polyphosphate-5-phosphatase F isoform 1 cfa
CANINE_2:CFAAFFX.18991.1.S1_S_AT similar to inositol polyphosphate-5-phosphatase F isoform 1 cfa
DROSOPHILA_2:1636454_AT dm
DROSGENOME1:150315_AT dm
CHICKEN:GGA.13374.1.S1_AT inositol polyphosphate-5-phosphatase F gga
CHICKEN:GGA.6172.1.S1_AT inositol polyphosphate-5-phosphatase F gga
CHICKEN:GGAAFFX.22928.1.S1_AT inositol polyphosphate-5-phosphatase F gga
HG-U133A:203607_AT inositol polyphosphate-5-phosphatase F hs
HG-U133_PLUS_2:203607_AT inositol polyphosphate-5-phosphatase F hs
HG-U133A_2:203607_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBA:H15203_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBB:RC_N73551_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBC:RC_AA430333_AT inositol polyphosphate-5-phosphatase F hs
HU35KSUBD:RC_AA491243_AT inositol polyphosphate-5-phosphatase F hs
U133_X3P:G7662413_3P_AT inositol polyphosphate-5-phosphatase F hs
U133_X3P:HS.52463.1.S1_3P_A_AT inositol polyphosphate-5-phosphatase F hs
HG-U133_PLUS_2:230362_AT inositol polyphosphate-5-phosphatase F hs
HG-U133B:230362_AT inositol polyphosphate-5-phosphatase F hs
HG-U133_PLUS_2:230363_S_AT inositol polyphosphate-5-phosphatase F hs
HG-U133B:230363_S_AT inositol polyphosphate-5-phosphatase F hs
HG-U95AV2:36089_AT inositol polyphosphate-5-phosphatase F hs
HG-U95B:47043_AT inositol polyphosphate-5-phosphatase F hs
HG-U95C:50781_AT inositol polyphosphate-5-phosphatase F hs
HG-U95D:89312_AT Inositol polyphosphate-5-phosphatase F hs
MOUSE430_2:1442100_AT inositol polyphosphate-5-phosphatase F mm
MOE430B:1442100_AT inositol polyphosphate-5-phosphatase F mm
MG-U74BV2:165339_F_AT inositol polyphosphate-5-phosphatase F mm
MG-U74BV2:162739_AT inositol polyphosphate-5-phosphatase F mm
MG-U74CV2:167769_F_AT inositol polyphosphate-5-phosphatase F mm
MOE430B:1433542_AT inositol polyphosphate-5-phosphatase F mm
MOUSE430_2:1433542_AT inositol polyphosphate-5-phosphatase F mm
MOE430B:1447757_X_AT inositol polyphosphate-5-phosphatase F mm
MOUSE430_2:1447757_X_AT inositol polyphosphate-5-phosphatase F mm
MG-U74CV2:137065_AT inositol polyphosphate-5-phosphatase F mm
MG-U74CV2:168450_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOE430B:1439126_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOUSE430_2:1439126_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOE430B:1445884_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MOUSE430_2:1445884_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MU19KSUBB:TC29111_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
MU19KSUBC:TC37618_AT Inositol polyphosphate-5-phosphatase F, mRNA (cDNA clone IMAGE:6816706) mm
RG-U34C:H34543_AT inositol polyphosphate-5-phosphatase F (predicted) rn
RAE230B:1391312_AT inositol polyphosphate-5-phosphatase F (predicted) rn
RAT230_2:1391312_AT inositol polyphosphate-5-phosphatase F (predicted) rn
RAE230A:1389176_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RAT230_2:1389176_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RAE230B:1398696_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RAT230_2:1398696_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RG-U34B:RC_AA899228_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
RG-U34C:RC_AI235352_AT Inositol polyphosphate-5-phosphatase F (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB63333 Hypothetical protein W09C5.7 [Caenorhabditis elegans] ref|NP_493393.1| W09C5.7 [Caenorhabditis elegans] 0.0
blast CAE72583 Hypothetical protein CBG19771 [Caenorhabditis briggsae] 0.0
blast XP_392092 PREDICTED: similar to GA20719-PA [Apis mellifera] 4.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.5E-54
Pfam IPR002013 EMBL-EBI Synaptojanin, N-terminal 1.7E-52
Sequence
Target Sequence 
>C. ELEGANS:178417_S_AT
gacacagtcgtcatattaacccgctccaatttgtatattgtaacctatgaaatcgatgga
gaaaagatgactgatgtgcaaatcgttgcgctggaagatatcaatactattcaaacagga
acatctggaaataatcgacaatgtgctcgactggaaactctcgaaggtgtattcatttgg
aggccatctactgttcggttatttaataatactgcaatccgtctgaaatccttggaagaa
gccaatgagtatatttcgtcggtcgctgagcagattcaggttggcaggaatatgctgact
ggcgctgaaggttcagttgttccggtggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACAGTCGTCATATTAACCCGCT 250 367 1735 Antisense
ATTAACCCGCTCCAATTTGTATATT 327 11 1749 Antisense
GACTGATGTGCAAATCGTTGCGCTG 568 375 1803 Antisense
GACAATGTGCTCGACTGGAAACTCT 252 365 1871 Antisense
GACTGGAAACTCTCGAAGGTGTATT 232 243 1883 Antisense
AGGTGTATTCATTTGGAGGCCATCT 616 57 1899 Antisense
AGGCCATCTACTGTTCGGTTATTTA 563 1 1915 Antisense
AATACTGCAATCCGTCTGAAATCCT 686 171 1942 Antisense
ATATTTCGTCGGTCGCTGAGCAGAT 575 19 1985 Antisense
ATATGCTGACTGGCGCTGAAGGTTC 570 17 2024 Antisense
TGAAGGTTCAGTTGTTCCGGTGGCA 599 571 2040 Antisense
Sequence Source Affymetrix Proprietary Database