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[178416_at]

Description R02D5.4 /REP_DB=WormBase Gene ID /WP=CE12492 /TR=Q21634 /GB=CAB01431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 53.5
(-0.6)
A 		19.7
(-2.7)
A 		14.7
(-3)
A 		112.8
(3)
A 		98
B 12.3
(-3)
A 		55.5
(0.8)
A 		25.5
(-1.8)
A 		80.3
(3)
A 		68
C 46.9
(-1.5)
A 		49.1
(-1.4)
A 		7.4
(-3)
A 		164.7
(3)
P 		157
avr 37.6
(-1.7) 		41.4
(-1.5) 		15.9
(-3) 		119.3
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 67.1
(3)
A 		45.5
(0.8)
A 		58.4
(2.1)
A 		7.5
(-3)
A 		15.1
(-2.2)
A 		31.6
(-0.6)
A 		60
B 15.5
(-2)
A 		36.4
(2.6)
A 		10.8
(-3)
A 		11.1
(-2.9)
A 		38.3
(3)
A 		18.6
(-1.3)
A 		28
C 12
(-2.9)
A 		119.9
(3)
A 		24.5
(-2.2)
A 		56.6
(-0.4)
A 		9.3
(-3)
A 		33.5
(-1.7)
A 		111
avr 31.5
(-1.6) 		67.3
(3) 		31.2
(-1.7) 		25.1
(-2.5) 		20.9
(-3) 		27.9
(-2.1) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 19.5
(3)
A 		4.3
(-2.8)
A 		3.8
(-3)
A 		16.5
(1.9)
A 		16
B 3.9
(-3)
A 		13.7
(1.5)
A 		5.9
(-2.1)
A 		17.1
(3)
A 		13
C 15.5
(0.1)
A 		14.1
(-0.3)
A 		2.6
(-3)
A 		27.8
(3)
P 		25
avr 13
(0.3) 		10.7
(-0.6) 		4.1
(-3) 		20.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 12.4
(1.4)
A 		16.2
(3)
A 		12.7
(1.5)
A 		1.9
(-3)
A 		4.5
(-1.9)
A 		7.7
(-0.6)
A 		14
B 5.4
(-1.7)
A 		12.1
(1.4)
A 		2.6
(-3)
A 		2.9
(-2.9)
A 		15.5
(3)
A 		6.9
(-1)
A 		13
C 4.4
(-2.8)
A 		36.6
(3)
A 		6.2
(-2.4)
A 		11.4
(-1.5)
A 		3
(-3)
A 		11.2
(-1.5)
A 		34
avr 7.4
(-2.3) 		21.6
(3) 		7.2
(-2.3) 		5.4
(-3) 		7.7
(-2.1) 		8.6
(-1.8) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178416_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14547
Sequence Type Exemplar sequence
Representative Public ID R02D5.4 NCBI
Target Description R02D5.4 /REP_DB=WormBase Gene ID /WP=CE12492 /TR=Q21634 /GB=CAB01431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074193 NCBI Caenorhabditis elegans R02D5.4 (R02D5.4) mRNA, complete cds. 11/11 None
SNAP00000007915 ENSEMBL cdna:SNAP chromosome:CEL140:V:14486921:14487266:-1 11/11 None
GENEFINDER00000007928 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14486932:14487659:-1 11/11 None
R02D5.4 ENSEMBL cdna:known chromosome:CEL140:V:14486921:14487266:-1 gene:R02D5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14486920-14487266(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D5.4
Entrez Gene 187522 Entrez gene
SwissProt Q21634 EMBL-EBI
WormBase CE12492 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01431 Hypothetical protein R02D5.4 [Caenorhabditis elegans] ref|NP_506594.1| R02D5.4 [Caenorhabditis elegans] 8.0E-42
blast CAB01431 Hypothetical protein R02D5.4 [Caenorhabditis elegans] ref|NP_506594.1| R02D5.4 [Caenorhabditis elegans] 2.0E-40
blast CAE60884 Hypothetical protein CBG04599 [Caenorhabditis briggsae] 2.0E-31
blast CAE60884 Hypothetical protein CBG04599 [Caenorhabditis briggsae] 6.0E-30
Sequence
Target Sequence 
>C. ELEGANS:178416_AT
gcatcagccaccgacgtatgaagactcgatcaagtcatactcaccgcccaagtatgacat
gacaccggctacaactaattcgacaactcataactcaatggaacttcccacaagtagcgc
cacaactgcacgcatcgaaggagctcgtatggaatcctcacggcagactccaattctact
tctcaacagatcaatgtcggattcttgtctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCAGCCACCGACGTATGAAGAC 274 309 45 Antisense
GACTCGATCAAGTCATACTCACCGC 322 373 67 Antisense
ACTCACCGCCCAAGTATGACATGAC 562 99 83 Antisense
ATGACATGACACCGGCTACAACTAA 444 45 98 Antisense
GGCTACAACTAATTCGACAACTCAT 116 537 111 Antisense
TCATAACTCAATGGAACTTCCCACA 671 615 132 Antisense
CACAAGTAGCGCCACAACTGCACGC 224 193 153 Antisense
CAACTGCACGCATCGAAGGAGCTCG 67 187 167 Antisense
GGAGCTCGTATGGAATCCTCACGGC 307 521 184 Antisense
ACTCCAATTCTACTTCTCAACAGAT 432 99 211 Antisense
GATCAATGTCGGATTCTTGTCTGAA 71 423 233 Antisense
Sequence Source Affymetrix Proprietary Database