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[178415_s_at]

Description F40F8.5 /REP_DB=WormBase Gene ID /WP=CE05845 /TR=Q20227 /GB=CAA93261.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 89      6grp_total > 68      4grp_total > 54      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 786
1 2 3 4 range
A 1531.6
(3)
P 		985.4
(-3)
P 		1195.1
(-0.7)
P 		1113.9
(-1.6)
P 		546
B 1606.1
(3)
P 		1451
(0.8)
P 		1247.1
(-2)
P 		1175.9
(-3)
P 		430
C 1771.2
(3)
P 		1327.7
(-1)
P 		1268.3
(-1.5)
P 		1103.7
(-3)
P 		668
avr 1636.3
(3) 		1254.7
(-1.5) 		1236.8
(-1.7) 		1131.2
(-3) 		505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1792
1 2 3 4 5 6 range
A 1279.7
(-1.5)
P 		1110.8
(-2.2)
P 		901.3
(-3)
P 		958.9
(-2.8)
P 		1365.2
(-1.1)
P 		2399.2
(3)
P 		1498
B 1294.8
(-1.5)
P 		898.5
(-3)
P 		1162.3
(-2)
P 		1221.7
(-1.8)
P 		1562.4
(-0.5)
P 		2498.3
(3)
P 		1600
C 1206.1
(-1.9)
P 		869.6
(-3)
P 		1309.3
(-1.5)
P 		1164.2
(-2)
P 		1335.4
(-1.4)
P 		2661.6
(3)
P 		1792
avr 1260.2
(-1.8) 		959.6
(-3) 		1124.3
(-2.4) 		1114.9
(-2.4) 		1421
(-1.2) 		2519.7
(3) 		1560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 423
1 2 3 4 range
A 557.7
(3)
P 		213.9
(-2.2)
P 		312.4
(-0.7)
P 		163.1
(-3)
P 		395
B 512.2
(3)
P 		358.4
(-0.5)
P 		289
(-2.1)
P 		250.6
(-3)
P 		262
C 586.3
(3)
P 		381.7
(-0.1)
P 		442
(0.8)
P 		186.1
(-3)
P 		400
avr 552.1
(3) 		318
(-1) 		347.8
(-0.5) 		199.9
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 235.9
(-2.4)
P 		395.1
(0.1)
P 		196.3
(-3)
P 		243.2
(-2.3)
P 		411.9
(0.3)
P 		584.1
(3)
P 		388
B 450.5
(-1.4)
P 		299.1
(-2.8)
P 		282.2
(-3)
P 		323.6
(-2.6)
P 		634.8
(0.3)
P 		931.6
(3)
P 		649
C 447
(-1.1)
P 		265.3
(-2.7)
P 		333.2
(-2.1)
P 		234.1
(-3)
P 		432.1
(-1.2)
P 		891
(3)
P 		657
avr 377.8
(-1.8) 		319.8
(-2.4) 		270.6
(-3) 		267
(-3) 		492.9
(-0.5) 		802.2
(3) 		535
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178415_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3484
Sequence Type Exemplar sequence
Representative Public ID F40F8.5 NCBI
Target Description F40F8.5 /REP_DB=WormBase Gene ID /WP=CE05845 /TR=Q20227 /GB=CAA93261.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063987 NCBI Caenorhabditis elegans F40F8.5 (F40F8.5) mRNA, complete cds. 11/11 None
SNAP00000001353 ENSEMBL cdna:SNAP chromosome:CEL140:II:11130761:11136974:-1 11/11 None
GENEFINDER00000001361 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11130742:11132497:-1 10/11 None
F40F8.5 ENSEMBL cdna:known chromosome:CEL140:II:11130610:11134841:-1 gene:F40F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11130757-11134753(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F8.5
Entrez Gene 174702 Entrez gene
SwissProt Q20227 EMBL-EBI
WormBase CE32888 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93261 Hypothetical protein F40F8.5 [Caenorhabditis elegans] ref|NP_496388.2| F40F8.5 [Caenorhabditis elegans] 0.0
blast CAE59562 Hypothetical protein CBG02959 [Caenorhabditis briggsae] 1.0E-147
blast CAE59562 Hypothetical protein CBG02959 [Caenorhabditis briggsae] 1.0E-146
blast CAE59561 Hypothetical protein CBG02958 [Caenorhabditis briggsae] 1.0E-142
blast CAE59561 Hypothetical protein CBG02958 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001353 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:178415_S_AT
gtcgcacagcgcactagctaaggatataatcaaagcagcgaatatcagcaaggagaaggt
ggatgaatggaggaacagcaaaggtctcgagacgatccaaaaagctcttcatgcgaaagt
cacccagtctgctcatttgcgcgaagctctcaaagaaagcggagataacattctggtcca
tgcgttcgctcgtgacagtatatacggaacaggatgtacgatcccggcgattaaaaaatg
gttggatgatttatcgaaagctggtgtgaaacatttgaaaattcctgctactttcccact
taacaagacaacagttcaacactgcccagtttttgcacaaggacgcaacgttctcggagt
gattcttatgcagttacgacagaagatcagctcgggagaaatccaggttgtcgatatgtc
caggattttcaatgctctcagagtcaacaacgccccagcagagcctatggacacgtcatc
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCACAGCGCACTAGCTAAGGAT 675 473 2127 Antisense
GACGATCCAAAAAGCTCTTCATGCG 651 377 2217 Antisense
CTTCATGCGAAAGTCACCCAGTCTG 661 219 2233 Antisense
ATAACATTCTGGTCCATGCGTTCGC 380 25 2291 Antisense
CATGCGTTCGCTCGTGACAGTATAT 73 211 2305 Antisense
GGAACAGGATGTACGATCCCGGCGA 54 529 2332 Antisense
TTGAAAATTCCTGCTACTTTCCCAC 438 703 2401 Antisense
GTTCAACACTGCCCAGTTTTTGCAC 531 445 2440 Antisense
AGGACGCAACGTTCTCGGAGTGATT 635 55 2466 Antisense
GTCCAGGATTTTCAATGCTCTCAGA 289 477 2544 Antisense
GCAGAGCCTATGGACACGTCATCGA 593 311 2584 Antisense
Sequence Source Affymetrix Proprietary Database