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[178414_s_at]

Description F33H2.1 /REP_DB=WormBase Gene ID /WP=CE17764 /TR=O62217 /GB=CAB04262.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 48      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 83
(-1.5)
A 		72.1
(-3)
A 		115.2
(3)
A 		92.7
(-0.1)
A 		43
B 95
(1.4)
A 		76.1
(-2.7)
A 		102.2
(3)
A 		74.5
(-3)
A 		28
C 77.2
(-3)
A 		103.2
(3)
A 		78.8
(-2.6)
P 		90.4
(0)
A 		26
avr 85.1
(-2.5) 		83.8
(-3) 		98.7
(3) 		85.9
(-2.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 100.4
(-0.6)
A 		57.5
(-2.1)
A 		64.1
(-1.8)
A 		82.4
(-1.2)
A 		30.9
(-3)
A 		202.6
(3)
P 		172
B 65.7
(-0.4)
A 		56.5
(-0.8)
A 		7.1
(-3)
A 		76.3
(0.1)
A 		118.8
(1.9)
A 		143.2
(3)
P 		136
C 95
(0.5)
A 		58.9
(-1.2)
A 		95.3
(0.6)
A 		20.8
(-3)
A 		118.7
(1.7)
M 		146.3
(3)
P 		126
avr 87
(-1.3) 		57.6
(-2.9) 		55.5
(-3) 		59.8
(-2.8) 		89.5
(-1.1) 		164
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 30.2
(3)
A 		15.6
(-2.3)
A 		30.1
(3)
A 		13.6
(-3)
A 		17
B 30.3
(3)
A 		18.8
(-1.8)
A 		23.7
(0.2)
A 		15.9
(-3)
A 		14
C 25.5
(1.3)
A 		29.7
(3)
A 		27.5
(2.1)
P 		15.2
(-3)
A 		15
avr 28.7
(3) 		21.4
(-0.2) 		27.1
(2.3) 		14.9
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 18.5
(-1.6)
A 		20.5
(-1.3)
A 		14
(-2.3)
A 		20.9
(-1.3)
A 		9.3
(-3)
A 		49.3
(3)
P 		40
B 22.9
(-0.5)
A 		18.8
(-1)
A 		1.7
(-3)
A 		20.2
(-0.9)
A 		48.3
(2.4)
A 		53.4
(3)
P 		52
C 35.2
(1.2)
A 		18
(-1.2)
A 		24.3
(-0.3)
A 		4.2
(-3)
A 		38.4
(1.6)
M 		49
(3)
P 		45
avr 25.5
(-1) 		19.1
(-2.1) 		13.3
(-3) 		15.1
(-2.7) 		32
(0) 		50.6
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178414_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.378
Sequence Type Exemplar sequence
Representative Public ID F33H2.1 NCBI
Target Description F33H2.1 /REP_DB=WormBase Gene ID /WP=CE17764 /TR=O62217 /GB=CAB04262.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061217 NCBI Caenorhabditis elegans Deletions Of G-rich DNA family member (dog-1) (dog-1) mRNA, complete cds. 11/11 None
SNAP00000009479 ENSEMBL cdna:SNAP chromosome:CEL140:I:15025591:15038668:-1 11/11 None
GENEFINDER00000009488 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15025591:15031098:-1 11/11 None
F33H2.1 ENSEMBL cdna:known chromosome:CEL140:I:15025415:15031098:-1 gene:F33H2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15025521-15031029(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dog-1
Ensembl F33H2.1
Entrez Gene 173370 Entrez gene
SwissProt O62217 EMBL-EBI
WormBase CE17764 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256082_AT helicase-related at
CANINE_2:CFAAFFX.27154.1.S1_AT similar to BRCA1 interacting protein C-terminal helicase 1 cfa
CHICKEN:GGA.17801.1.S1_S_AT BRCA1 interacting protein C-terminal helicase 1 gga
CHICKEN:GGAAFFX.26464.1.S1_AT BRCA1 interacting protein C-terminal helicase 1 gga
HG-U133_PLUS_2:221703_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U133A_2:221703_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U133A:221703_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U95B:42109_AT BRCA1 interacting protein C-terminal helicase 1 hs
HU35KSUBD:RC_AA435715_AT BRCA1 interacting protein C-terminal helicase 1 hs
U133_X3P:G13661818_3P_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U95C:62361_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U133_PLUS_2:235609_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U133B:235609_AT BRCA1 interacting protein C-terminal helicase 1 hs
HG-U95B:55362_AT BRCA1 interacting protein C-terminal helicase 1 hs
HU35KSUBA:AA256106_AT BRCA1 interacting protein C-terminal helicase 1 hs
HU35KSUBD:RC_AA442060_AT BRCA1 interacting protein C-terminal helicase 1 hs
U133_X3P:HS.87507.0.A1_3P_AT BRCA1 interacting protein C-terminal helicase 1 hs
MOE430B:1458427_AT BRCA1 interacting protein C-terminal helicase 1 mm
MOUSE430_2:1458427_AT BRCA1 interacting protein C-terminal helicase 1 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6139 nucleobase, nucleoside, nucleotide and nucleic acid metabolism inferred from electronic annotation QuickGO AmiGO
6289 nucleotide-excision repair inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4003 ATP-dependent DNA helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
16818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04262 Hypothetical protein F33H2.1 [Caenorhabditis elegans] ref|NP_493618.1| Deletions Of G-rich DNA family member (dog-1) [Caenorhabditis elegans] 0.0
blast CAE72541 Hypothetical protein CBG19723 [Caenorhabditis briggsae] 0.0
blast CAB04267 Hypothetical protein F33H2.7 [Caenorhabditis elegans] ref|NP_493620.2| F33H2.7 [Caenorhabditis elegans] 1.0E-120
blast NP_840094 BRCA1 interacting protein C-terminal helicase 1 [Mus musculus] emb|CAI24235.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus] emb|CAI25368.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus] emb|CAI25868.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus] gb|AAH94252.1| BRCA1 interacting protein C-terminal helicase 1 [Mus musculus] sp|Q5SXJ3|FANCJ_MOUSE Fanconi anemia group J protein homolog (Protein FACJ) (BRCA1-interacting protein C-terminal helicase 1) (BRCA1-interacting protein 1) (BRCA1-associated C-terminal helicase 1) 5.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 6.8E-7
Pfam IPR010614 EMBL-EBI DEAD_2 8.5E-71
Pfam IPR010614 EMBL-EBI DEAD_2 8.5E-71
Sequence
Target Sequence 
>C. ELEGANS:178414_S_AT
tctacgagccgcgaagatcctcagaattaacatcagtaatggatcaattcgatgcggcga
tcttcgatccgtctagattcggtgcaaacatcaacggatctcttatgtttgccgtttttc
gtggaaaagtttccgagggcattgattttgccgatgatcgtgcgcgtgtggtgatttctg
tcggaattccgtatccaaatgcgatggatgatcaagtgaatgcgaaaaagttgtataatg
atcagaattccaaggaaaaggggattttgactggcgatgagtggtataccacgcaggcct
atcgagcattgaatcaggctttgggaagatgtctccggcacaaaaacgactggggagcaa
tgctaatgatcgatgaacgcctagaacgtcaaactggaaatcttgtgggcggagcctcgt
ctgctcgtgtctcaaaatggattcgtgctcaactgaaaagctatccgagttttaaagaat
ttaatgcgaattttcgcgaattcatccagcgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACGAGCCGCGAAGATCCTCAGA 669 613 2408 Antisense
GATCTTCGATCCGTCTAGATTCGGT 506 419 2466 Antisense
CTCTTATGTTTGCCGTTTTTCGTGG 177 229 2507 Antisense
TGATCGTGCGCGTGTGGTGATTTCT 468 565 2562 Antisense
GTCGGAATTCCGTATCCAAATGCGA 456 471 2587 Antisense
GAGTGGTATACCACGCAGGCCTATC 360 401 2686 Antisense
GCAGGCCTATCGAGCATTGAATCAG 40 311 2700 Antisense
GGCTTTGGGAAGATGTCTCCGGCAC 409 537 2724 Antisense
ACTGGAAATCTTGTGGGCGGAGCCT 10 97 2800 Antisense
TCGTCTGCTCGTGTCTCAAAATGGA 361 605 2824 Antisense
TTTTCGCGAATTCATCCAGCGTCGA 435 675 2898 Antisense
Sequence Source Affymetrix Proprietary Database