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[178413_at]

Description ZC482.4 /REP_DB=WormBase Gene ID /WP=CE16694 /TR=O18275 /GB=CAB07718.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 30.1
(3)
A 		23.3
(1.5)
A 		2.4
(-3)
A 		7.7
(-1.9)
A 		28
B 5.7
(-3)
A 		8
(-2.2)
A 		14.3
(-0.2)
A 		23.9
(3)
A 		18
C 11.8
(-3)
A 		29
(-0.4)
A 		16.6
(-2.3)
A 		51.3
(3)
A 		40
avr 15.9
(-1.3) 		20.1
(0.3) 		11.1
(-3) 		27.6
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 56.2
(3)
A 		29.9
(-0)
A 		36.4
(0.7)
A 		11.9
(-2.1)
A 		4.5
(-3)
A 		4.3
(-3)
A 		52
B 12.5
(-1)
A 		4.6
(-3)
A 		22.3
(1.5)
A 		28
(3)
A 		15.8
(-0.1)
A 		22.9
(1.7)
A 		23
C 23.2
(1.4)
P 		9.3
(-2.1)
A 		18.2
(0.2)
A 		5.6
(-3)
A 		29.5
(3)
A 		15.8
(-0.4)
A 		24
avr 30.6
(3) 		14.6
(-2.9) 		25.6
(1.2) 		15.2
(-2.7) 		16.6
(-2.2) 		14.3
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11
(3)
A 		5
(-0.5)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		10
B 1.8
(-3)
A 		2
(-2.6)
A 		3.3
(-0.3)
A 		5.1
(3)
A 		3
C 3.9
(-3)
A 		8.3
(2.6)
A 		5.8
(-0.6)
A 		8.6
(3)
A 		5
avr 5.6
(3) 		5.1
(1.8) 		3.2
(-3) 		4.9
(1.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 10.4
(2.9)
A 		10.6
(3)
A 		7.9
(1.3)
A 		3
(-1.8)
A 		1.3
(-2.8)
A 		1
(-3)
A 		10
B 4.3
(-0.6)
A 		1.5
(-3)
A 		5.4
(0.3)
A 		7.4
(2.1)
A 		6.4
(1.2)
A 		8.5
(3)
A 		7
C 8.6
(2.4)
P 		2.8
(-1.8)
A 		4.6
(-0.5)
A 		1.1
(-3)
A 		9.5
(3)
A 		5.3
(-0)
A 		8
avr 7.8
(3) 		5
(-1.2) 		6
(0.3) 		3.8
(-3) 		5.7
(-0.1) 		4.9
(-1.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6675
Sequence Type Exemplar sequence
Representative Public ID ZC482.4 NCBI
Target Description ZC482.4 /REP_DB=WormBase Gene ID /WP=CE16694 /TR=O18275 /GB=CAB07718.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067259(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067259 NCBI Caenorhabditis elegans ZC482.4 (ZC482.4) mRNA, complete cds. 10/11 None
GENEFINDER00000004051 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12764961:12768328:1 11/11 None
ZC482.4 ENSEMBL cdna:known chromosome:CEL140:III:12764426:12768921:1 gene:ZC482.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12764421-12768324(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC482.4
Entrez Gene 191186 Entrez gene
SwissProt O18275 EMBL-EBI
WormBase CE37805 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07718 Hypothetical protein ZC482.4 [Caenorhabditis elegans] ref|NP_499660.2| ZC482.4 [Caenorhabditis elegans] 0.0
blast CAB07721 Hypothetical protein ZC482.7 [Caenorhabditis elegans] ref|NP_499657.1| ZC482.7 [Caenorhabditis elegans] 1.0E-111
blast CAB07721 Hypothetical protein ZC482.7 [Caenorhabditis elegans] ref|NP_499657.1| ZC482.7 [Caenorhabditis elegans] 1.0E-107
blast AAB65879 Hypothetical protein F59D6.4 [Caenorhabditis elegans] ref|NP_503827.1| F59D6.4 [Caenorhabditis elegans] 1.0E-100
blast AAB65879 Hypothetical protein F59D6.4 [Caenorhabditis elegans] ref|NP_503827.1| F59D6.4 [Caenorhabditis elegans] 3.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-11
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000004051 1 382-404
Sequence
Target Sequence 
>C. ELEGANS:178413_AT
atttttgcttgacaatctcggaagttattttttatttctggttttgcacactttccgtaa
agaatttccatgcgaaactttgtgacgagcaagacccaaaacatgttatatgtcactttg
aatcgttgaaatcgttaccgaacaattgtgatgtaataattggaaatttgataattgatg
ctggcgatgaagaatttatttcaaaagtgaaagctaccaaatatctgattggaacactga
taataagaaatacaaatctgaaaaagattgatactttgtctgaattgcttctgatttgtt
cttttaatgatgctgtgccactcgttcaaatacattcgaataaacaaatgaaaaaagcta
atttgggaagagtgatcaatctggtaacaggaggtgaaagaatcgccattatccaagata
atcacccggatttgttcaaatcaagggaatgcgacttatttccttacttatacacttttg
ttaatttgacatatatcggaggaaactgtggagaaagagttaatattacattttcaattg
caacaccactctccattatttcagcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTGCTTGACAATCTCGGAAGT 204 15 914 Antisense
TGGTTTTGCACACTTTCCGTAAAGA 281 549 952 Antisense
TTCCATGCGAAACTTTGTGACGAGC 470 701 979 Antisense
GTGACGAGCAAGACCCAAAACATGT 239 483 995 Antisense
GATACTTTGTCTGAATTGCTTCTGA 591 423 1183 Antisense
ATTGCTTCTGATTTGTTCTTTTAAT 279 7 1197 Antisense
GATGCTGTGCCACTCGTTCAAATAC 542 413 1222 Antisense
GGTGAAAGAATCGCCATTATCCAAG 248 501 1306 Antisense
GATAATCACCCGGATTTGTTCAAAT 206 423 1330 Antisense
GAATGCGACTTATTTCCTTACTTAT 452 331 1360 Antisense
ACCACTCTCCATTATTTCAGCATTC 508 85 1458 Antisense
Sequence Source Affymetrix Proprietary Database