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[178412_at]

Description R02D5.3 /REP_DB=WormBase Gene ID /WP=CE12490 /TR=Q21635 /GB=CAB01432.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 83      4grp_high_8_8 > 15      6grp_highest_nonorm > 72      6grp_total > 75      4grp_total > 0      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 260.8
(-2.6)
P 		243
(-3)
P 		305.7
(-1.7)
P 		536.6
(3)
P 		294
B 270.6
(-1.1)
P 		205.7
(-3)
A 		301.1
(-0.3)
P 		414.3
(3)
P 		209
C 252.2
(-2.4)
P 		236.1
(-3)
P 		345.5
(1.1)
P 		396.6
(3)
P 		161
avr 261.2
(-2.1) 		228.3
(-3) 		317.4
(-0.6) 		449.2
(3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 529.2
(2.9)
P 		336.3
(-3)
P 		442.4
(0.3)
P 		532.1
(3)
P 		432.6
(-0)
P 		507.2
(2.2)
P 		196
B 424.9
(-1.6)
P 		410.6
(-2.8)
P 		476.1
(3)
P 		420.8
(-1.9)
P 		433
(-0.8)
P 		408.6
(-3)
P 		68
C 452.1
(1)
P 		322
(-3)
P 		395.5
(-0.7)
P 		514.4
(2.9)
P 		407.4
(-0.4)
P 		517
(3)
P 		195
avr 468.7
(2.1) 		356.3
(-3) 		438
(0.7) 		489.1
(3) 		424.3
(0.1) 		477.6
(2.5) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 95
(3)
P 		52.7
(-3)
P 		79.9
(0.9)
P 		78.6
(0.7)
P 		42
B 86.3
(2.7)
P 		50.8
(-3)
A 		69.8
(0)
P 		88.3
(3)
P 		38
C 83.5
(-1.1)
P 		67.9
(-2.9)
P 		120.4
(3)
P 		66.9
(-3)
P 		54
avr 88.3
(2.7) 		57.1
(-3) 		90
(3) 		77.9
(0.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 97.6
(-2.8)
P 		119.6
(0.6)
P 		96.3
(-3)
P 		135
(3)
P 		130.5
(2.3)
P 		123.5
(1.2)
P 		39
B 147.8
(0.4)
P 		136.7
(-0.7)
P 		115.6
(-2.6)
P 		111.5
(-3)
P 		175.9
(3)
P 		152.4
(0.8)
P 		64
C 167.6
(2.6)
P 		98.3
(-3)
P 		100.7
(-2.8)
P 		103.4
(-2.6)
P 		131.8
(-0.3)
P 		173.1
(3)
P 		75
avr 137.7
(1.4) 		118.2
(-1.2) 		104.2
(-3) 		116.6
(-1.4) 		146.1
(2.5) 		149.7
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14438
Sequence Type Exemplar sequence
Representative Public ID R02D5.3 NCBI
Target Description R02D5.3 /REP_DB=WormBase Gene ID /WP=CE12490 /TR=Q21635 /GB=CAB01432.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074192 NCBI Caenorhabditis elegans R02D5.3 (R02D5.3) mRNA, complete cds. 11/11 None
SNAP00000007914 ENSEMBL cdna:SNAP chromosome:CEL140:V:14485749:14486806:1 11/11 None
GENEFINDER00000007925 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14484485:14486806:1 11/11 None
R02D5.3 ENSEMBL cdna:known chromosome:CEL140:V:14484889:14486908:1 gene:R02D5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14484888-14486806(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D5.3
Entrez Gene 187521 Entrez gene
SwissProt Q21635 EMBL-EBI
WormBase CE12490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01432 Hypothetical protein R02D5.3 [Caenorhabditis elegans] ref|NP_506593.1| R02D5.3 [Caenorhabditis elegans] 1.0E-157
blast CAB01432 Hypothetical protein R02D5.3 [Caenorhabditis elegans] ref|NP_506593.1| R02D5.3 [Caenorhabditis elegans] 1.0E-155
blast CAB01432 Hypothetical protein R02D5.3 [Caenorhabditis elegans] ref|NP_506593.1| R02D5.3 [Caenorhabditis elegans] 1.0E-130
blast CAE60885 Hypothetical protein CBG04600 [Caenorhabditis briggsae] 1.0E-91
blast CAE60885 Hypothetical protein CBG04600 [Caenorhabditis briggsae] 2.0E-91
blast CAE60885 Hypothetical protein CBG04600 [Caenorhabditis briggsae] 3.0E-91
blast CAB01438 Hypothetical protein F08H9.9 [Caenorhabditis elegans] emb|CAB01152.1| Hypothetical protein F08H9.9 [Caenorhabditis elegans] ref|NP_506591.1| C-type LECtin family member (clec-55) [Caenorhabditis elegans] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 3.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506593.1 3 4-21,97-119,310-332
R02D5.3 3 4-21,97-119,310-332
SNAP00000007914 1 217-239
GENEFINDER00000007925 3 86-108,182-204,395-417
Sequence
Target Sequence 
>C. ELEGANS:178412_AT
gagaccaattgctcatgcactcaacagtcgctatgctctccgtcacccagaggttacaca
gtttcaattgcagtagtggagaagatgcatttagaccacaatgagacgtcacgcgagctg
atcctccaagctgcaaagatctttgcagacgtgatccgagatcgtcagaaccggggtcaa
tgcgacgatgacattctcattttcttgtctacccgggatcaagttgtctattcttcaatt
ggttcagcaattcgaatcgatgattctataattcgaagcatatctgaacaaggagagatt
ttcttcaagaaaatgcaatatcgagagggtctggagtggatgacgaaacaatataaacat
gtgttaaaggaagaaaggattgagaaactatggaactggcctcttccagagtgggtaatt
cttgcactagcaggtcttgtacttgttgtccttgcaactttaatctgctcaatcatctac
atgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCAATTGCTCATGCACTCAAC 498 393 529 Antisense
ATGCACTCAACAGTCGCTATGCTCT 2 45 543 Antisense
TCTCCGTCACCCAGAGGTTACACAG 70 609 565 Antisense
ATGAGACGTCACGCGAGCTGATCCT 71 47 629 Antisense
AGCTGATCCTCCAAGCTGCAAAGAT 591 79 644 Antisense
CGAGATCGTCAGAACCGGGGTCAAT 89 249 685 Antisense
GTCTACCCGGGATCAAGTTGTCTAT 597 457 735 Antisense
GAACTGGCCTCTTCCAGAGTGGGTA 256 349 921 Antisense
GCACTAGCAGGTCTTGTACTTGTTG 74 317 952 Antisense
TTGTCCTTGCAACTTTAATCTGCTC 223 707 974 Antisense
TAATCTGCTCAATCATCTACATGTG 454 635 989 Antisense
Sequence Source Affymetrix Proprietary Database