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[178411_s_at]

Description W02D9.7 /REP_DB=WormBase Gene ID /WP=CE14466 /TR=Q9XVG9 /GB=CAB03464.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 50      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 22.6
(3)
A 		12.9
(-0.8)
A 		11.8
(-1.2)
A 		7.3
(-3)
A 		15
B 13
(-3)
A 		62.6
(2.4)
A 		68.5
(3)
A 		32.3
(-0.9)
A 		56
C 16
(0.3)
A 		21.5
(3)
A 		9.4
(-3)
A 		11.3
(-2.1)
A 		12
avr 17.2
(-2.9) 		32.3
(3) 		29.9
(2.1) 		17
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 28.8
(-2.9)
A 		35.7
(-2.8)
A 		20.6
(-3)
A 		45.5
(-2.7)
A 		322.3
(0.4)
P 		549.8
(3)
P 		529
B 11
(-2.9)
A 		5.5
(-3)
A 		41.9
(-2.5)
A 		5.7
(-3)
A 		323.6
(1.5)
P 		428.5
(3)
P 		423
C 39.6
(-2.7)
A 		17.8
(-3)
A 		18
(-3)
A 		53.5
(-2.6)
A 		513.3
(3)
P 		478.4
(2.6)
P 		496
avr 26.5
(-2.9) 		19.7
(-3) 		26.8
(-2.9) 		34.9
(-2.8) 		386.4
(1.7) 		485.6
(3) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.2
(3)
A 		2.8
(-1.6)
A 		3.1
(-1.3)
A 		1.1
(-3)
A 		7
B 4.2
(-3)
A 		15.5
(2.8)
A 		15.9
(3)
A 		6.9
(-1.6)
A 		12
C 5.3
(1.7)
A 		6.2
(3)
A 		3.3
(-1)
A 		1.9
(-3)
A 		4
avr 5.9
(0.2) 		8.2
(3) 		7.4
(2) 		3.3
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 5.3
(-3)
A 		12.7
(-2.6)
A 		4.5
(-3)
A 		11.5
(-2.7)
A 		97.3
(1.3)
P 		133.9
(3)
P 		129
B 3.8
(-2.9)
A 		1.8
(-3)
A 		10.2
(-2.7)
A 		1.5
(-3)
A 		131.5
(1.9)
P 		159.8
(3)
P 		158
C 14.7
(-2.6)
A 		5.4
(-3)
A 		4.6
(-3)
A 		10.8
(-2.8)
A 		166.1
(3)
P 		160.1
(2.8)
P 		162
avr 7.9
(-2.9) 		6.6
(-3) 		6.4
(-3) 		7.9
(-2.9) 		131.6
(2.2) 		151.3
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178411_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1273
Sequence Type Exemplar sequence
Representative Public ID W02D9.7 NCBI
Target Description W02D9.7 /REP_DB=WormBase Gene ID /WP=CE14466 /TR=Q9XVG9 /GB=CAB03464.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060782 NCBI Caenorhabditis elegans W02D9.7 (W02D9.7) mRNA, complete cds. 11/11 None
SNAP00000003938 ENSEMBL cdna:SNAP chromosome:CEL140:I:12567486:12567779:-1 11/11 None
GENEFINDER00000003945 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12567486:12567983:-1 11/11 None
W02D9.7 ENSEMBL cdna:known chromosome:CEL140:I:12567396:12567779:-1 gene:W02D9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12567416-12567710(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D9.7
Entrez Gene 173126 Entrez gene
SwissProt Q9XVG9 EMBL-EBI
WormBase CE14466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03464 Hypothetical protein W02D9.7 [Caenorhabditis elegans] ref|NP_493183.1| W02D9.7 [Caenorhabditis elegans] 4.0E-50
blast CAB03464 Hypothetical protein W02D9.7 [Caenorhabditis elegans] ref|NP_493183.1| W02D9.7 [Caenorhabditis elegans] 6.0E-50
Sequence
Target Sequence 
>C. ELEGANS:178411_S_AT
cgcctatccccgagatccaagagggctccagcaatccattcggagaacttataggatccg
aaattagttcggaagctgatgtcgatgaaaccaccaccgtacgggcagtctatgatagcg
acgaagatgcgggactcgtgttctctggtgacatatctgccgaagaaggctccggcaatg
ctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCTATCCCCGAGATCCAAGAGGG 514 257 65 Antisense
ATCCAAGAGGGCTCCAGCAATCCAT 383 37 79 Antisense
GGGCTCCAGCAATCCATTCGGAGAA 196 493 87 Antisense
GAAATTAGTTCGGAAGCTGATGTCG 646 359 124 Antisense
TGATGTCGATGAAACCACCACCGTA 209 567 141 Antisense
CACCACCGTACGGGCAGTCTATGAT 582 201 156 Antisense
ACGGGCAGTCTATGATAGCGACGAA 125 95 165 Antisense
GCGACGAAGATGCGGGACTCGTGTT 439 285 182 Antisense
GACTCGTGTTCTCTGGTGACATATC 134 375 197 Antisense
TCTCTGGTGACATATCTGCCGAAGA 516 611 206 Antisense
CCGAAGAAGGCTCCGGCAATGCTCA 636 261 224 Antisense
Sequence Source Affymetrix Proprietary Database