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[178410_s_at]

Description R04D3.4 /REP_DB=WormBase Gene ID /WP=CE06225 /TR=Q21711 /GB=CAA94161.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 7.5
(0.8)
A 		6
(-0.8)
A 		9.7
(3)
A 		3.8
(-3)
A 		6
B 2.5
(-3)
A 		2.8
(-2.9)
A 		4.5
(-2.6)
A 		30.5
(3)
A 		28
C 3.8
(-2.9)
A 		7.1
(-2.2)
A 		3.3
(-3)
A 		30.7
(3)
A 		27
avr 4.6
(-3) 		5.3
(-2.8) 		5.8
(-2.6) 		21.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 9
(-2.9)
A 		5
(-3)
A 		6.2
(-3)
A 		6.8
(-2.9)
A 		87.2
(-0.4)
A 		193.2
(3)
P 		188
B 3.8
(-3)
A 		4.4
(-3)
A 		7.7
(-2.9)
A 		8.3
(-2.9)
A 		77.4
(-0.8)
A 		207.5
(3)
P 		204
C 8.4
(-3)
A 		8.5
(-3)
A 		8.4
(-3)
A 		28.8
(-2.2)
A 		98.7
(0.6)
A 		157
(3)
P 		149
avr 7.1
(-3) 		6
(-3) 		7.4
(-3) 		14.6
(-2.7) 		87.8
(-0.3) 		185.9
(3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.7
(3)
A 		1.3
(-1)
A 		2.5
(2.4)
A 		0.6
(-3)
A 		2
B 0.8
(-2.9)
A 		0.7
(-3)
A 		1.1
(-2.6)
A 		6.5
(3)
A 		6
C 1.3
(-2.7)
A 		2.1
(-1.5)
A 		1.1
(-3)
A 		5.2
(3)
A 		4
avr 1.6
(-2.6) 		1.4
(-3) 		1.6
(-2.6) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 1.7
(-3)
A 		1.8
(-2.9)
A 		1.4
(-3)
A 		1.7
(-3)
A 		26.3
(0.3)
A 		47
(3)
P 		46
B 1.3
(-3)
A 		1.5
(-3)
A 		1.9
(-3)
A 		2.2
(-2.9)
A 		31.4
(-0.6)
A 		77.4
(3)
P 		76
C 3.1
(-2.9)
A 		2.6
(-2.9)
A 		2.1
(-3)
A 		5.8
(-2.6)
A 		31.9
(0.5)
A 		52.6
(3)
P 		51
avr 2
(-3) 		2
(-3) 		1.8
(-3) 		3.2
(-2.9) 		29.9
(-0.1) 		59
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178410_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17872
Sequence Type Exemplar sequence
Representative Public ID R04D3.4 NCBI
Target Description R04D3.4 /REP_DB=WormBase Gene ID /WP=CE06225 /TR=Q21711 /GB=CAA94161.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077808 NCBI Caenorhabditis elegans R04D3.4 (R04D3.4) mRNA, complete cds. 11/11 None
SNAP00000014108 ENSEMBL cdna:SNAP chromosome:CEL140:X:13287826:13288725:-1 11/11 None
GENEFINDER00000014117 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13287826:13288725:-1 11/11 None
R04D3.4 ENSEMBL cdna:known chromosome:CEL140:X:13287822:13288728:-1 gene:R04D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13287825-13288725(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04D3.4
Entrez Gene 181452 Entrez gene
SwissProt Q21711 EMBL-EBI
WormBase CE06225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94161 Hypothetical protein R04D3.4 [Caenorhabditis elegans] ref|NP_510209.1| R04D3.4 [Caenorhabditis elegans] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:178410_S_AT
ttcgcttcctttgcatttgctggagtgcaaacaagtggctccaggagttttcgaattcac
caccactgatgatgtatgtgaacagtatggactttcgcacagagccacgttcactatccc
tcttactgcagaggaggttgcgaggttggatttcgaaagatccgcgtcaaagcaggaacc
tcgagctttgggaaaagttgctgttgatgagaagaacaagtgttcaacttttgagaaaca
tgacgactggtccaaggataagaaggtattgatgcctgaaaaagctatgccgatggctat
gccacacgtctcacgcaaggttgctgttgataagagaagcgtgctctctgagatggcaga
cgcttcgagtattgtattccagcgcaaaactcggaaagtcggaaccaagtccaaacatca
aaagaaacatggcaaccgtttcatgattgatcatgagctgattctgcagcaatttcgtga
catcagtttggaacagtttgagttttcatccaactctgggaatgctcctccaactacaaa
tgacaacaaagagcttcttcacaaactgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCTTCCTTTGCATTTGCTGGAG 154 695 72 Antisense
CCAGGAGTTTTCGAATTCACCACCA 675 265 112 Antisense
TATGGACTTTCGCACAGAGCCACGT 331 655 157 Antisense
GATCCGCGTCAAAGCAGGAACCTCG 570 415 230 Antisense
TATGCCGATGGCTATGCCACACGTC 70 657 357 Antisense
CACACGTCTCACGCAAGGTTGCTGT 671 193 374 Antisense
GAAGCGTGCTCTCTGAGATGGCAGA 615 343 407 Antisense
GCAGACGCTTCGAGTATTGTATTCC 560 311 427 Antisense
GATTCTGCAGCAATTTCGTGACATC 44 433 531 Antisense
TCATCCAACTCTGGGAATGCTCCTC 441 619 577 Antisense
AAAGAGCTTCTTCACAAACTGCCGA 312 121 619 Antisense
Sequence Source Affymetrix Proprietary Database