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[178409_s_at]

Description F58B3.3 /REP_DB=WormBase Gene ID /WP=CE06005 /TR=Q20968 /GB=CAA97801.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 90      6grp_total > 30      4grp_total > 54      6grp_highest_sub > 02_03      6grp_cgc > 73      6grp_high1_sub > 02_03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 301.7
(3)
P 		125.3
(-3)
P 		153.5
(-2)
P 		136.3
(-2.6)
A 		176
B 262.3
(3)
P 		151.3
(0)
P 		118.9
(-0.8)
P 		37
(-3)
A 		225
C 367.5
(3)
P 		159.4
(-1.4)
P 		120.5
(-2.2)
P 		81.3
(-3)
P 		286
avr 310.5
(3) 		145.3
(-1.4) 		131
(-1.8) 		84.9
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 167
(1.8)
P 		186.3
(2.8)
P 		190.7
(3)
P 		178.3
(2.4)
P 		120.6
(-0.4)
P 		68.2
(-3)
P 		123
B 128.3
(-3)
P 		192.7
(3)
P 		182.1
(2)
P 		173.4
(1.2)
P 		175.5
(1.4)
P 		138.8
(-2)
P 		64
C 127.7
(-1.3)
P 		156.6
(0.6)
P 		191.1
(3)
P 		123.2
(-1.6)
P 		132.7
(-1)
P 		103.4
(-3)
P 		88
avr 141
(-0.3) 		178.5
(2.3) 		188
(3) 		158.3
(0.9) 		142.9
(-0.2) 		103.5
(-3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 109.8
(3)
P 		27.2
(-2.5)
P 		40.1
(-1.7)
P 		20
(-3)
A 		90
B 83.6
(3)
P 		37.4
(-0.7)
P 		27.5
(-1.4)
P 		7.9
(-3)
A 		76
C 121.6
(3)
P 		45.8
(-1.2)
P 		42
(-1.4)
P 		13.7
(-3)
P 		108
avr 105
(3) 		36.8
(-1.5) 		36.5
(-1.5) 		13.9
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 30.8
(-1.3)
P 		66.3
(3)
P 		41.5
(0)
P 		45.2
(0.5)
P 		36.4
(-0.6)
P 		16.6
(-3)
P 		50
B 44.7
(-2.9)
P 		64.1
(1.4)
P 		44.2
(-3)
P 		45.9
(-2.6)
P 		71.3
(3)
P 		51.7
(-1.3)
P 		27
C 47.3
(2.7)
P 		47.8
(2.8)
P 		48.6
(3)
P 		24.8
(-3)
P 		42.9
(1.6)
P 		34.6
(-0.5)
P 		24
avr 40.9
(-1.4) 		59.4
(3) 		44.8
(-0.5) 		38.6
(-2) 		50.2
(0.8) 		34.3
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178409_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9985
Sequence Type Exemplar sequence
Representative Public ID F58B3.3 NCBI
Target Description F58B3.3 /REP_DB=WormBase Gene ID /WP=CE06005 /TR=Q20968 /GB=CAA97801.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069793 NCBI Caenorhabditis elegans LYSozyme family member (lys-6) (lys-6) mRNA, complete cds. 11/11 A 
SNAP00000008571 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11626932:11627905:-1 11/11 None
GENEFINDER00000008581 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11626932:11627905:-1 11/11 None
F58B3.3 ENSEMBL cdna:known chromosome:CEL140:IV:11626920:11627905:-1 gene:F58B3.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11626937-11627911(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-6
Ensembl F58B3.3
Entrez Gene 178087 Entrez gene
SwissProt Q20968 EMBL-EBI
WormBase CE06005 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9253 peptidoglycan catabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3796 lysozyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97801 Hypothetical protein F58B3.3 [Caenorhabditis elegans] ref|NP_502194.1| LYSozyme family member (lys-6) [Caenorhabditis elegans] 1.0E-122
blast CAE62087 Hypothetical protein CBG06111 [Caenorhabditis briggsae] 1.0E-106
blast CAA97797 Hypothetical protein F58B3.1 [Caenorhabditis elegans] ref|NP_502192.1| LYSozyme family member (lys-4) [Caenorhabditis elegans] 1.0E-106
Sequence
Target Sequence 
>C. ELEGANS:178409_S_AT
tcaactcttatcttaatcagtgcagtcagtgccgtcagaaatggaattgatttcattcag
ccagtatctgttgctacattcacttgtgttaaaaatgcaggatattctttcgtaattcca
agagtttttacttctgttggaacagttgatcatactggaattcagaatgtggccaacgca
agagcagctggcctcactgatgtcgatggatacatcttcccttgcctaaaatcgacttgc
gcatctgctgctaaccaagttaaggcgtctcttgatgcagttaaggctgctggaactaag
atctccactctatggcttgatattgaacgtctcaattggccagctgatcatgctagcaac
cgtgcattcattgaagcaatggtcagtgaagcaaaggcttatggacaacaagttggaatc
tacagtaactattacaattggcaagatattgttggattggattatcatggacaatctagt
ttgatgctttggtgggctgcatacgatggagtcaaggatttctcgaagtttgctgctttt
ggaggatggtcatcaccgacaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTCTTATCTTAATCAGTGCAG 162 631 28 Antisense
AATCAGTGCAGTCAGTGCCGTCAGA 15 135 42 Antisense
GCAGTCAGTGCCGTCAGAAATGGAA 558 311 49 Antisense
AATTGATTTCATTCAGCCAGTATCT 312 179 72 Antisense
GCCAGTATCTGTTGCTACATTCACT 271 281 87 Antisense
CTGTTGCTACATTCACTTGTGTTAA 279 239 95 Antisense
GGAATTCAGAATGTGGCCAACGCAA 139 533 184 Antisense
GGCCAACGCAAGAGCAGCTGGCCTC 651 543 198 Antisense
AAGGATTTCTCGAAGTTTGCTGCTT 153 161 541 Antisense
GTTTGCTGCTTTTGGAGGATGGTCA 60 451 555 Antisense
GAGGATGGTCATCACCGACAATTCA 572 403 569 Antisense
Sequence Source Affymetrix Proprietary Database