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[178407_at]

Description B0365.2 /REP_DB=WormBase Gene ID /WP=CE07720 /TR=P90734 /GB=CAB02693.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.4
(-3)
A 		7
(-2)
A 		2.3
(-3)
A 		31.5
(3)
A 		29
B 1
(-3)
A 		3.9
(3)
A 		3.7
(2.6)
A 		1.6
(-1.8)
A 		3
C 1.1
(-3)
A 		20.8
(1.4)
A 		2.8
(-2.6)
A 		28.1
(3)
A 		27
avr 1.5
(-3) 		10.6
(-0.1) 		2.9
(-2.6) 		20.4
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		0.7
(-3)
A 		1
(-2.9)
A 		22.1
(3)
A 		4.4
(-2)
A 		2.1
(-2.6)
A 		21
B 26.6
(3)
A 		0.8
(-3)
A 		18.2
(1)
A 		2.3
(-2.7)
A 		22.6
(2.1)
A 		1.1
(-2.9)
A 		26
C 1.3
(-3)
A 		13.3
(1.4)
A 		17.6
(3)
A 		2.9
(-2.4)
A 		3
(-2.4)
A 		2.4
(-2.6)
A 		16
avr 10.2
(1.8) 		4.9
(-1.3) 		12.3
(3) 		9.1
(1.2) 		10
(1.7) 		1.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-2.6)
A 		1.5
(-1.7)
A 		0.6
(-3)
A 		4.6
(3)
A 		4
B 0.3
(-3)
A 		1
(3)
A 		0.8
(1.3)
A 		0.3
(-3)
A 		1
C 0.4
(-3)
A 		6
(3)
A 		1
(-2.4)
A 		4.7
(1.6)
A 		6
avr 0.5
(-3) 		2.8
(2.1) 		0.8
(-2.3) 		3.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		0.2
(-3)
A 		0.2
(-3)
A 		5.6
(3)
A 		1.3
(-1.8)
A 		0.5
(-2.7)
A 		5
B 9.3
(3)
A 		0.3
(-3)
A 		4.4
(-0.3)
A 		0.6
(-2.8)
A 		9.2
(2.9)
A 		0.4
(-2.9)
A 		9
C 0.5
(-3)
A 		4.1
(2.4)
A 		4.5
(3)
A 		0.6
(-2.9)
A 		1
(-2.3)
A 		0.8
(-2.6)
A 		4
avr 3.4
(2.3) 		1.5
(-1.3) 		3
(1.5) 		2.3
(0.2) 		3.8
(3) 		0.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14659
Sequence Type Exemplar sequence
Representative Public ID B0365.2 NCBI
Target Description B0365.2 /REP_DB=WormBase Gene ID /WP=CE07720 /TR=P90734 /GB=CAB02693.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073867 NCBI Caenorhabditis elegans B0365.2 (B0365.2) mRNA, complete cds. 11/11 None
GENEFINDER00000032436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13123266:13126011:-1 11/11 None
B0365.2 ENSEMBL cdna:known chromosome:CEL140:V:13123266:13126011:-1 gene:B0365.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032428 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13123265-13126011(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0365.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_506268 B0365.2 [Caenorhabditis elegans] 1.0E-176
blast AAB65390 Seven tm receptor protein 144 [Caenorhabditis elegans] ref|NP_505082.1| Seven TM Receptor family member (str-144) [Caenorhabditis elegans] 5.0E-87
blast CAE66143 Hypothetical protein CBG11373 [Caenorhabditis briggsae] 2.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506268.1 7 10-32,45-67,87-109,130-152,191-213,237-256,276-295
B0365.2 7 10-32,45-67,87-109,130-152,191-213,237-256,276-295
GENEFINDER00000032436 7 10-32,45-67,87-109,130-152,191-213,237-256,276-295
Sequence
Target Sequence 
>C. ELEGANS:178407_AT
aatttctagcgatttgcaagccaacattattgtcaaatttgaaaggtttcatgttgacat
taatatttattccttgtttaatttgtttctttgcttggtttggacttgctgaattcggaa
tatcagtaatgctgggaaactatgatattgatttgagaaacactacattcatgggcccat
tatattttacaatcggaccagatggagaaagacagtggaaatttccagatattatcagtt
atttgggatgttccttcattagtggaatatgcttcataacaatcactatttgtgctctaa
aaatgcgaactaaattgaacaattctcgatcttcaatgagtgccaagacaaggtcactaa
acaggcaattattcaggactctcttaattcaaacaatatttccagcagtattaatgtata
tacctgtaagcaaggtcatgaccgttcctttcttcgaaattggaattggaaagttttcga
atttcggcggagtattggttgcaatatatcctgcaattgagccatgtattgctattcttt
gtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCTAGCGATTTGCAAGCCAAC 118 175 353 Antisense
TTTGTTTCTTTGCTTGGTTTGGACT 75 667 434 Antisense
GGTTTGGACTTGCTGAATTCGGAAT 193 503 449 Antisense
GAAACACTACATTCATGGGCCCATT 608 355 509 Antisense
GGGCCCATTATATTTTACAATCGGA 501 491 525 Antisense
AATTCTCGATCTTCAATGAGTGCCA 284 177 673 Antisense
CAGGCAATTATTCAGGACTCTCTTA 475 209 714 Antisense
GCAAGGTCATGACCGTTCCTTTCTT 511 321 782 Antisense
GAATTTCGGCGGAGTATTGGTTGCA 180 323 831 Antisense
ATATCCTGCAATTGAGCCATGTATT 706 19 858 Antisense
GCCATGTATTGCTATTCTTTGTATC 346 281 873 Antisense
Sequence Source Affymetrix Proprietary Database