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[178406_at]

Description M02G9.3 /REP_DB=WormBase Gene ID /WP=CE20017 /TR=Q9XUS0 /GB=CAB04626.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 65.9
(-2.5)
A 		424.6
(3)
P 		378.5
(2.3)
P 		36.6
(-3)
A 		388
B 49
(-2.9)
A 		546.9
(3)
P 		465.5
(2)
P 		41.3
(-3)
A 		506
C 54.3
(-3)
A 		481.9
(3)
P 		412.4
(2)
P 		51.3
(-3)
A 		431
avr 56.4
(-2.8) 		484.5
(3) 		418.8
(2.1) 		43.1
(-3) 		441

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 76.7
(-3)
A 		249.1
(3)
P 		128.9
(-1.2)
P 		144.6
(-0.6)
P 		210
(1.6)
P 		247.8
(3)
P 		172
B 108.4
(-3)
A 		245.6
(3)
P 		145.9
(-1.4)
P 		214.5
(1.6)
P 		189.6
(0.6)
P 		232.2
(2.4)
P 		137
C 61.4
(-3)
A 		280.8
(3)
P 		164.3
(-0.2)
P 		169.1
(-0.1)
P 		145.4
(-0.7)
P 		223
(1.4)
P 		219
avr 82.2
(-3) 		258.5
(3) 		146.4
(-0.8) 		176.1
(0.2) 		181.7
(0.4) 		234.3
(2.2) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 24
(-1.8)
A 		92.2
(2.6)
P 		98.9
(3)
P 		5.4
(-3)
A 		94
B 15.6
(-2.7)
A 		135.1
(3)
P 		107.9
(1.7)
P 		8.8
(-3)
A 		126
C 18
(-2.6)
A 		138.6
(2.8)
P 		143.7
(3)
P 		8.6
(-3)
A 		135
avr 19.2
(-2.4) 		122
(3) 		116.8
(2.7) 		7.6
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 14.1
(-3)
A 		88.6
(3)
P 		28.1
(-1.9)
P 		36.7
(-1.2)
P 		63.4
(1)
P 		60.3
(0.7)
P 		75
B 37.7
(-2.7)
A 		81.8
(2.4)
P 		35.4
(-3)
P 		56.8
(-0.5)
P 		77
(1.9)
P 		86.6
(3)
P 		51
C 22.8
(-3)
A 		85.7
(3)
P 		41.8
(-1.2)
P 		34
(-1.9)
P 		47.1
(-0.7)
P 		74.6
(1.9)
P 		63
avr 24.9
(-3) 		85.4
(3) 		35.1
(-2) 		42.5
(-1.3) 		62.5
(0.7) 		73.8
(1.8) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3442
Sequence Type Exemplar sequence
Representative Public ID M02G9.3 NCBI
Target Description M02G9.3 /REP_DB=WormBase Gene ID /WP=CE20017 /TR=Q9XUS0 /GB=CAB04626.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063820 NCBI Caenorhabditis elegans M02G9.3 (M02G9.3) mRNA, complete cds. 11/11 None
SNAP00000014965 ENSEMBL cdna:SNAP chromosome:CEL140:II:10318205:10319820:1 11/11 None
M02G9.3 ENSEMBL cdna:known chromosome:CEL140:II:10318205:10319820:1 gene:M02G9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014971 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10318201-10319817(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02G9.3
Entrez Gene 187406 Entrez gene
SwissProt Q9XUS0 EMBL-EBI
WormBase CE20017 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04626 Hypothetical protein M02G9.3 [Caenorhabditis elegans] ref|NP_496221.1| M02G9.3 [Caenorhabditis elegans] 2.0E-68
blast CAE59371 Hypothetical protein CBG02722 [Caenorhabditis briggsae] 6.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496221.1 1 5-27
M02G9.3 1 5-27
SNAP00000014965 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:178406_AT
tcatgtcaatccgcttgctcatcggcttgcactacgcccacttgcatacgtacttgccaa
agaaattcgtgttcaaatctttgcaacaccggttcaaactcttgcacaaatcgctgcaac
tctcaatgtcttcaaatctgtactactccatcttgtactaatacttgctccaactcgtgt
tcgaacgcttgctcaaatggtggaaatcaaccaatcgtcattgtgattccatcaagtagt
agaaactgtcagaattcgtgtcaaaatcaatgctcatcggcatgtactacaatgacttgc
cgtcaaacatgccaaaacacttgtctaggatcatgtaattcatgctccggtggtggttgc
aatagcaataactctaatctcgtagtggtgactccctgcgagcgctcatgtaacagtggc
tgccgttccacgtgttcttcaacatccacccttagtgtctgcattccagcatgtcaacaa
acttgccggtcaacttgtagtactgccaaaacttttgtgattccatgcacttctggtaca
tctggaaactcgtgttcatgttctactggttactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGTCAATCCGCTTGCTCATCGG 545 621 292 Antisense
GCAACACCGGTTCAAACTCTTGCAC 337 317 374 Antisense
CAAATCTGTACTACTCCATCTTGTA 454 193 424 Antisense
CTAATACTTGCTCCAACTCGTGTTC 303 227 449 Antisense
TAATTCATGCTCCGGTGGTGGTTGC 377 635 627 Antisense
CTAATCTCGTAGTGGTGACTCCCTG 113 227 665 Antisense
GAGCGCTCATGTAACAGTGGCTGCC 529 385 691 Antisense
GTGTCTGCATTCCAGCATGTCAACA 633 485 746 Antisense
TGCCGGTCAACTTGTAGTACTGCCA 84 585 775 Antisense
GATTCCATGCACTTCTGGTACATCT 578 433 810 Antisense
GTGTTCATGTTCTACTGGTTACTCG 507 483 843 Antisense
Sequence Source Affymetrix Proprietary Database