[Home] | [Total List]

[178405_at]

Description C05G5.1 /REP_DB=WormBase Gene ID /WP=CE05224 /TR=Q17675 /GB=CAA94104.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 12      4grp_total > 62      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 503.2
(3)
P 		348.6
(-0.1)
P 		367.4
(0.3)
P 		201.2
(-3)
P 		302
B 476.2
(3)
P 		371.7
(0.7)
P 		367.4
(0.6)
P 		202
(-3)
P 		274
C 505.1
(3)
P 		362.4
(0)
P 		402.7
(0.9)
P 		218.3
(-3)
P 		287
avr 494.8
(3) 		360.9
(0.2) 		379.2
(0.6) 		207.2
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 335.1
(1.9)
P 		365.6
(3)
P 		260.1
(-0.8)
P 		276.5
(-0.2)
P 		229.6
(-1.9)
P 		200.4
(-3)
P 		165
B 262.9
(-0.3)
P 		363.2
(3)
P 		246.3
(-0.9)
P 		183.5
(-3)
P 		234.3
(-1.3)
P 		201
(-2.4)
P 		180
C 278.8
(-0.7)
P 		380.5
(3)
P 		316.1
(0.7)
P 		242.8
(-2)
P 		214.7
(-3)
P 		279.8
(-0.6)
P 		166
avr 292.3
(-0.2) 		369.8
(3) 		274.2
(-1) 		234.3
(-2.7) 		226.2
(-3) 		227.1
(-3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 183.2
(3)
P 		75.7
(-1.2)
P 		96
(-0.4)
P 		29.5
(-3)
P 		154
B 151.9
(3)
P 		91.8
(-0.3)
P 		85.1
(-0.7)
P 		43
(-3)
P 		109
C 167.2
(3)
P 		104.2
(0.1)
P 		140.3
(1.8)
P 		36.8
(-3)
P 		130
avr 167.4
(3) 		90.6
(-0.5) 		107.1
(0.2) 		36.4
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 61.8
(-2)
P 		130
(3)
P 		56.6
(-2.4)
P 		70.1
(-1.4)
P 		69.3
(-1.5)
P 		48.8
(-3)
P 		81
B 91.5
(0.6)
P 		120.9
(3)
P 		59.8
(-2.1)
P 		48.6
(-3)
P 		95.2
(0.9)
P 		75
(-0.8)
P 		72
C 103.4
(1.9)
P 		116.1
(3)
P 		80.5
(-0.2)
P 		48.8
(-3)
P 		69.5
(-1.2)
P 		93.7
(1)
P 		67
avr 85.6
(-0.3) 		122.3
(3) 		65.6
(-2.1) 		55.8
(-3) 		78
(-1) 		72.5
(-1.5) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17354
Sequence Type Exemplar sequence
Representative Public ID C05G5.1 NCBI
Target Description C05G5.1 /REP_DB=WormBase Gene ID /WP=CE05224 /TR=Q17675 /GB=CAA94104.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078046 NCBI Caenorhabditis elegans C05G5.1 (C05G5.1) mRNA, complete cds. 11/11 None
SNAP00000001546 ENSEMBL cdna:SNAP chromosome:CEL140:X:14734429:14736193:-1 11/11 None
GENEFINDER00000001559 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14734429:14737281:-1 11/11 None
C05G5.1 ENSEMBL cdna:known chromosome:CEL140:X:14734388:14740006:-1 gene:C05G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14734428-14737293(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05G5.1
Entrez Gene 182275 Entrez gene
SwissProt Q17675 EMBL-EBI
WormBase CE05224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94104 Hypothetical protein C05G5.1 [Caenorhabditis elegans] ref|NP_510447.1| C05G5.1 [Caenorhabditis elegans] 0.0
blast CAE63222 Hypothetical protein CBG07580 [Caenorhabditis briggsae] 0.0
blast CAE63222 Hypothetical protein CBG07580 [Caenorhabditis briggsae] 1.0E-178
blast CAE69845 Hypothetical protein CBG16171 [Caenorhabditis briggsae] 3.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510447.1 12 17-39,54-76,83-105,120-142,149-171,181-203,237-256,271-293,306-328,332-354,367-389,418-437
C05G5.1 12 17-39,54-76,83-105,120-142,149-171,181-203,237-256,271-293,306-328,332-354,367-389,418-437
SNAP00000001546 9 7-29,49-71,78-100,133-155,168-190,200-219,226-248,263-285,313-335
GENEFINDER00000001559 12 13-35,50-72,79-101,116-138,145-167,177-199,233-252,267-289,302-324,328-350,363-385,414-433
Sequence
Target Sequence 
>C. ELEGANS:178405_AT
gtcggtcttttcaacgcgttgtacaacaatctgcagccagcattgtgcgtgaaagggtat
aacccgacgttcaatggaggaatgggaaccttgttgatcatgtctggactcgttggagca
gctatcagtgggatcattgttgacaagtggggagaatttgaaaaagtaatgaaagtatca
ttttgcattgccggagttgcagcagcttccttatcaatttgtatcaactacgagggtgtg
cagtggtgggtgatactctcgatttttatctttggagctgctggattctcaatttatccg
attggtctcgagatgggagttgaggcgacattcccagtggcagaggccacgtcaaccgga
cttattatcatgattggacaggttcaaggagtattttatgtgattatgacaaatctagct
gtcggaaaaccggaccctcatgatatggccattcaaacgtgcgtggacaccaactctcag
aatcatacggtgttaacttggaaatggccattccttatctggctaatttgcatatctgtc
cttataactagttttgtggcattcttctggcctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGTCTTTTCAACGCGTTGTACA 486 471 754 Antisense
AATCTGCAGCCAGCATTGTGCGTGA 477 167 781 Antisense
GTCTGGACTCGTTGGAGCAGCTATC 630 471 855 Antisense
TGGTGGGTGATACTCTCGATTTTTA 596 551 997 Antisense
GGCGACATTCCCAGTGGCAGAGGCC 124 541 1077 Antisense
TAGCTGTCGGAAAACCGGACCCTCA 429 649 1169 Antisense
GGACCCTCATGATATGGCCATTCAA 180 523 1185 Antisense
CAAACGTGCGTGGACACCAACTCTC 660 191 1207 Antisense
GGAAATGGCCATTCCTTATCTGGCT 462 527 1253 Antisense
GGCTAATTTGCATATCTGTCCTTAT 65 539 1274 Antisense
GTTTTGTGGCATTCTTCTGGCCTAA 334 447 1304 Antisense
Sequence Source Affymetrix Proprietary Database