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[178404_at]

Description C01G6.2 /REP_DB=WormBase Gene ID /WP=CE02958 /TR=Q17578 /GB=CAA84641.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 79.8
(2.4)
M 		87.7
(3)
A 		14.2
(-3)
A 		65.9
(1.2)
A 		74
B 21.2
(-3)
A 		47.7
(1.3)
A 		36.1
(-0.6)
A 		58
(3)
A 		37
C 71.4
(2.9)
A 		40.6
(0.3)
A 		2.4
(-3)
A 		72.9
(3)
A 		71
avr 57.5
(2) 		58.7
(2.1) 		17.6
(-3) 		65.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 70.3
(1)
A 		52.3
(-1.3)
A 		38.7
(-3)
A 		50.6
(-1.5)
A 		86.4
(3)
P 		81.8
(2.4)
P 		48
B 52
(-0.4)
A 		53.3
(-0.3)
A 		19.8
(-3)
A 		73.3
(1.3)
A 		94.3
(2.9)
P 		95.1
(3)
P 		75
C 55.6
(-1)
A 		67.9
(0.9)
A 		42.3
(-3)
A 		45.8
(-2.5)
A 		77.5
(2.4)
P 		81.3
(3)
P 		39
avr 59.3
(-0.1) 		57.8
(-0.2) 		33.6
(-3) 		56.6
(-0.4) 		86.1
(3) 		86.1
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.1
(3)
M 		19
(0.6)
A 		3.7
(-3)
A 		9.6
(-1.6)
A 		25
B 6.8
(-3)
A 		11.8
(2.4)
A 		8.4
(-1.3)
A 		12.4
(3)
A 		6
C 23.6
(3)
A 		11.7
(-0.1)
A 		0.8
(-3)
A 		12.3
(0)
A 		23
avr 19.8
(3) 		14.2
(0.8) 		4.3
(-3) 		11.4
(-0.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13
(-1.4)
A 		18.6
(0.5)
A 		8.4
(-3)
A 		12.8
(-1.5)
A 		26.1
(3)
P 		19.9
(0.9)
P 		18
B 18.1
(-0.6)
A 		17.7
(-0.7)
A 		4.8
(-3)
A 		19.4
(-0.4)
A 		38.3
(3)
P 		35.5
(2.5)
P 		34
C 20.6
(0.8)
A 		20.7
(0.8)
A 		10.8
(-2.5)
A 		9.2
(-3)
A 		25.1
(2.3)
P 		27.2
(3)
P 		18
avr 17.2
(-0.5) 		19
(0) 		8
(-3) 		13.8
(-1.4) 		29.8
(3) 		27.5
(2.4) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3423
Sequence Type Exemplar sequence
Representative Public ID C01G6.2 NCBI
Target Description C01G6.2 /REP_DB=WormBase Gene ID /WP=CE02958 /TR=Q17578 /GB=CAA84641.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063573(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063573 NCBI Caenorhabditis elegans C01G6.2 (C01G6.2) mRNA, complete cds. 11/11 None
SNAP00000013215 ENSEMBL cdna:SNAP chromosome:CEL140:II:9267450:9268161:1 10/11 None
GENEFINDER00000013242 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9267450:9269743:1 10/11 None
C01G6.2 ENSEMBL cdna:known chromosome:CEL140:II:9267270:9268214:1 gene:C01G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9267446-9268204(+) 92.59 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G6.2
Entrez Gene 174468 Entrez gene
SwissProt Q17578 EMBL-EBI
WormBase CE02958 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84641 Hypothetical protein C01G6.2 [Caenorhabditis elegans] ref|NP_495974.1| C01G6.2 [Caenorhabditis elegans] 6.0E-65
blast CAA84641 Hypothetical protein C01G6.2 [Caenorhabditis elegans] ref|NP_495974.1| C01G6.2 [Caenorhabditis elegans] 5.0E-39
blast CAB02724 Hypothetical protein C03C11.1 [Caenorhabditis elegans] ref|NP_492645.1| C03C11.1 [Caenorhabditis elegans] 6.0E-39
blast CAE60215 Hypothetical protein CBG03783 [Caenorhabditis briggsae] 5.0E-37
blast CAE68963 Hypothetical protein CBG14943 [Caenorhabditis briggsae] 8.0E-20
blast T26470 hypothetical protein Y11D7A.15 - Caenorhabditis elegans 1.0E-19
blast CAB02724 Hypothetical protein C03C11.1 [Caenorhabditis elegans] ref|NP_492645.1| C03C11.1 [Caenorhabditis elegans] 4.0E-13
blast CAE60215 Hypothetical protein CBG03783 [Caenorhabditis briggsae] 9.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 9.4E-13
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.9E-35
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 4.7E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495974.1 2 10-29,111-129
C01G6.2 2 10-29,111-129
GENEFINDER00000013242 3 10-29,111-133,257-279
Sequence
Target Sequence 
>C. ELEGANS:178404_AT
ctcgctccaatggtgttcaccggatacgtcattgacaatgtggaggaaagaagaagactg
gtggatcatcgggtggtggtggagctaaaactggaggaggaggaggagatggtgcaacca
gtgcaaagagtgataagaaagaaaaatcatcgagtgctccaaacccagagggaccaaagg
ctccaagtgataagaatgctgtcgcagggacacatgatccaaattatcaaactcttgctg
gagttgatggaaatgtgttccaagagaaaggaaaagcttctcctgttgctgctgctggtg
gagcttctcctgctgctggtgctccaaaacctggaggtcctggaatggctgccacccacg
accccaactaccaaacacttgctggaattggaaacgattgtttcgacaagaaagaaggtg
caaaaccagctggtggtggtgcggctccaggtgctccaaaagccggtggtcctggaatgg
ctgctactcatgatccgaactatcagacactggctggaattggaagcgattgcttccaga
agaagtgatttgtgtcaactcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCTCCAATGGTGTTCACCGGAT 298 231 67 Antisense
GTGTTCACCGGATACGTCATTGACA 200 485 79 Antisense
TGGATCATCGGGTGGTGGTGGAGCT 600 547 128 Antisense
GTGGTGGAGCTAAAACTGGAGGAGG 65 489 142 Antisense
GGAGGAGATGGTGCAACCAGTGCAA 304 515 168 Antisense
AAAATCATCGAGTGCTCCAAACCCA 643 133 209 Antisense
AGTGCTCCAAACCCAGAGGGACCAA 707 59 219 Antisense
GAATGCTGTCGCAGGGACACATGAT 541 329 260 Antisense
GCAGGGACACATGATCCAAATTATC 206 311 270 Antisense
AGGAAAAGCTTCTCCTGTTGCTGCT 460 55 335 Antisense
AAGAAGTGATTTGTGTCAACTCGTG 33 153 606 Antisense
Sequence Source Affymetrix Proprietary Database