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[178403_at]

Description F10A3.2 /REP_DB=WormBase Gene ID /WP=CE15769 /TR=O45335 /GB=CAB07340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 04      6grp_total > 51      4grp_total > 15      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 74.6
(3)
P 		43.8
(-3)
P 		49.7
(-1.9)
M 		57.8
(-0.3)
A 		31
B 86.7
(3)
P 		37.3
(-2)
A 		43.7
(-1.3)
A 		27.2
(-3)
A 		60
C 62.7
(-1.4)
P 		38.7
(-3)
A 		38
(-3)
P 		133.6
(3)
P 		96
avr 74.7
(3) 		39.9
(-3) 		43.8
(-2.3) 		72.9
(2.7) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 75.4
(-1.1)
P 		94.2
(-0.1)
P 		153.9
(3)
P 		119.7
(1.2)
P 		51
(-2.3)
P 		37.7
(-3)
A 		116
B 65.8
(-0.5)
P 		62.5
(-0.7)
P 		124.6
(3)
P 		88.8
(0.9)
P 		76.8
(0.2)
P 		23.1
(-3)
A 		102
C 61.8
(-1)
P 		103.5
(1.2)
P 		112.2
(1.7)
P 		137.6
(3)
P 		57.6
(-1.2)
P 		23.2
(-3)
A 		114
avr 67.7
(-0.7) 		86.7
(0.4) 		130.2
(3) 		115.4
(2.1) 		61.8
(-1) 		28
(-3) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 27.2
(3)
P 		9.5
(-2.7)
P 		13
(-1.6)
M 		8.5
(-3)
A 		19
B 27.7
(3)
P 		9.2
(-2.1)
A 		10.1
(-1.8)
A 		5.8
(-3)
A 		22
C 20.8
(2.1)
P 		11.1
(-3)
A 		13.2
(-1.9)
P 		22.5
(3)
P 		11
avr 25.2
(3) 		9.9
(-3) 		12.1
(-2.1) 		12.3
(-2.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.9
(-1.8)
P 		33.5
(3)
P 		33.5
(3)
P 		30.4
(2.2)
P 		15.4
(-1.5)
P 		9.2
(-3)
A 		24
B 22.9
(0.8)
P 		20.8
(0.2)
P 		30.3
(2.8)
P 		23.5
(1)
P 		31.2
(3)
P 		8.6
(-3)
A 		23
C 22.9
(0.8)
P 		31.6
(3)
P 		28.6
(2.2)
P 		27.7
(2)
P 		18.6
(-0.3)
P 		7.8
(-3)
A 		24
avr 19.9
(0.1) 		28.6
(2.4) 		30.8
(3) 		27.2
(2) 		21.7
(0.6) 		8.5
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13785
Sequence Type Exemplar sequence
Representative Public ID F10A3.2 NCBI
Target Description F10A3.2 /REP_DB=WormBase Gene ID /WP=CE15769 /TR=O45335 /GB=CAB07340.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074664 NCBI Caenorhabditis elegans F10A3.2 (F10A3.2) mRNA, complete cds. 11/11 None
SNAP00000000091 ENSEMBL cdna:SNAP chromosome:CEL140:V:16144625:16145699:-1 11/11 None
F10A3.2 ENSEMBL cdna:known chromosome:CEL140:V:16144625:16145699:-1 gene:F10A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16144624-16145699(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10A3.2
Entrez Gene 184273 Entrez gene
SwissProt O45335 EMBL-EBI
WormBase CE35458 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07340 Hypothetical protein F10A3.2 [Caenorhabditis elegans] ref|NP_507065.2| F10A3.2 [Caenorhabditis elegans] 1.0E-177
blast CAB07340 Hypothetical protein F10A3.2 [Caenorhabditis elegans] ref|NP_507065.2| F10A3.2 [Caenorhabditis elegans] 1.0E-175
blast NP_500678 Y9C9A.12 [Caenorhabditis elegans] gb|AAF60924.1| Hypothetical protein Y9C9A.12 [Caenorhabditis elegans] 2.0E-33
blast NP_500678 Y9C9A.12 [Caenorhabditis elegans] gb|AAF60924.1| Hypothetical protein Y9C9A.12 [Caenorhabditis elegans] 1.0E-31
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 8.0E-31
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.0E-52
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.8E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.9E-51
Sequence
Target Sequence 
>C. ELEGANS:178403_AT
aagactttcgaaccaagtgcttcactaacctgctgagcactcttgaaactttgaaaccag
tgaaagcaaaatgtgtaatctttgaacttcatcctagtgaagttgccatggttttgccat
gttttggagagctagagcttattgaaatatttagcacacaagctcgttacaaattagatg
agcttatttatctggaacaatggaaaatggcaaaacgatttaaaggtgtctcatattgcg
atgcgttttcaattcctgtggagagtctactacactttgagcatttcgatattcatctga
gcactttcacagtggaagattgtttgaagatgagaaatgcaagtttagaatctaaacatg
gtcttaaaaaaagtggaaacttcaaatctggacgatttcgatgtcagaaactgaacagga
cagaaatcgcaaaagttttcaagccggactacgcgggagagccctcactggagtatgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTTTCGAACCAAGTGCTTCAC 301 151 419 Antisense
CAAGTGCTTCACTAACCTGCTGAGC 79 185 432 Antisense
TGCTGAGCACTCTTGAAACTTTGAA 341 581 449 Antisense
GTAATCTTTGAACTTCATCCTAGTG 445 461 493 Antisense
AGTGAAGTTGCCATGGTTTTGCCAT 41 61 514 Antisense
AGGTGTCTCATATTGCGATGCGTTT 455 57 642 Antisense
GATGCGTTTTCAATTCCTGTGGAGA 148 415 658 Antisense
GTCTACTACACTTTGAGCATTTCGA 550 469 683 Antisense
TATTCATCTGAGCACTTTCACAGTG 481 663 708 Antisense
TTTCAAGCCGGACTACGCGGGAGAG 133 667 855 Antisense
GGAGAGCCCTCACTGGAGTATGAAG 363 519 874 Antisense
Sequence Source Affymetrix Proprietary Database