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[178402_at]

Description C01H6.8 /REP_DB=WormBase Gene ID /WP=CE05191 /TR=Q17587 /GB=CAA95785.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_total > 60      4grp_total > 40      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 68.8
(-2.2)
P 		51.7
(-3)
P 		183.9
(3)
P 		123.1
(0.2)
P 		132
B 108.3
(-0.4)
P 		122.1
(3)
P 		105.3
(-1.2)
P 		97.9
(-3)
P 		24
C 120.9
(-0.6)
P 		145.3
(1.4)
P 		164.7
(3)
P 		91.1
(-3)
P 		74
avr 99.3
(-3) 		106.4
(-2.2) 		151.3
(3) 		104
(-2.5) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 140.4
(0.4)
P 		114.7
(-0.6)
P 		170.2
(1.7)
P 		200.7
(3)
P 		94.9
(-1.5)
P 		59.3
(-3)
P 		141
B 100.1
(-1.4)
P 		151.5
(1.7)
P 		174.2
(3)
P 		159.2
(2.1)
P 		116.2
(-0.4)
P 		72.4
(-3)
P 		102
C 162
(0.5)
P 		143.2
(-0.2)
P 		111
(-1.4)
P 		229
(3)
P 		111.6
(-1.3)
P 		66.8
(-3)
M 		162
avr 134.2
(0.1) 		136.5
(0.2) 		151.8
(0.9) 		196.3
(3) 		107.6
(-1.1) 		66.2
(-3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 25
(-0.8)
P 		11.2
(-3)
P 		48.1
(3)
P 		18
(-1.9)
P 		37
B 34.5
(3)
P 		30.2
(1.1)
P 		24.4
(-1.5)
P 		20.9
(-3)
P 		14
C 40
(0.5)
P 		41.8
(0.8)
P 		57.4
(3)
P 		15.4
(-3)
P 		42
avr 33.2
(0.6) 		27.7
(-0.7) 		43.3
(3) 		18.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 25.9
(-1.1)
P 		40.8
(1.3)
P 		37.1
(0.7)
P 		50.9
(3)
P 		28.6
(-0.7)
P 		14.4
(-3)
P 		37
B 34.8
(-1)
P 		50.4
(3)
P 		42.3
(0.9)
P 		42.2
(0.9)
P 		47.2
(2.2)
P 		27
(-3)
P 		23
C 60
(3)
P 		43.7
(0.4)
P 		28.2
(-2.1)
P 		46
(0.8)
P 		36.1
(-0.8)
P 		22.4
(-3)
M 		38
avr 40.2
(1.5) 		45
(2.7) 		35.9
(0.5) 		46.4
(3) 		37.3
(0.8) 		21.3
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1256
Sequence Type Exemplar sequence
Representative Public ID C01H6.8 NCBI
Target Description C01H6.8 /REP_DB=WormBase Gene ID /WP=CE05191 /TR=Q17587 /GB=CAA95785.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059641 NCBI Caenorhabditis elegans C01H6.8 (C01H6.8) mRNA, complete cds. 11/11 None
GENEFINDER00000008131 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7236092:7237408:1 9/11 None
C01H6.8 ENSEMBL cdna:known chromosome:CEL140:I:7236092:7237408:1 gene:C01H6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008122 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7236022-7237339(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01H6.8
Entrez Gene 182094 Entrez gene
SwissProt Q17587 EMBL-EBI
WormBase CE05191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95785 Hypothetical protein C01H6.8 [Caenorhabditis elegans] ref|NP_492042.1| C01H6.8 [Caenorhabditis elegans] 1.0E-122
blast CAA95785 Hypothetical protein C01H6.8 [Caenorhabditis elegans] ref|NP_492042.1| C01H6.8 [Caenorhabditis elegans] 1.0E-101
blast CAE74242 Hypothetical protein CBG21927 [Caenorhabditis briggsae] 2.0E-74
blast CAE74242 Hypothetical protein CBG21927 [Caenorhabditis briggsae] 1.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492042.1 2 69-86,166-188
C01H6.8 2 69-86,166-188
GENEFINDER00000008131 1 136-153
Sequence
Target Sequence 
>C. ELEGANS:178402_AT
gtggattttcttctgattacccaaaatagtccgaaattcagaaatcgtacaaaaataaaa
atcatgtcggaatacataacaaaaaatttttttcgattttttttcgtaaaatttttttta
actttggctattcttcctgaactgaaaaatcatgaagaagtccttctaaaagcagttgaa
atgatgaaacatgcaaatgaaaaaaaggatttagatgaaaatgaactggattacaaaaaa
agaattgctgaaattgaaaaagaactgaaagcgacaaaagatgatcatactagactacta
gaaaaacacgaagactatcttcgaaaattcgaaagtccaagaacatggtcagaaacattc
agtaagtatactggtgacgcatttggacgtcttttattcaatggattatggggagctatt
gtacttttacttccacttcttattcgaccatttcaacgtagatggcttacagctctccgt
ggtggagatggaccaactattgaagaggttactgagagtgatgatgatggcatgagaata
tcaaatgaagaagttcgtcagattctggattctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATTTTCTTCTGATTACCCAAA 377 489 133 Antisense
AACTTTGGCTATTCTTCCTGAACTG 636 139 252 Antisense
AAGAAGTCCTTCTAAAAGCAGTTGA 298 149 287 Antisense
AAAGATGATCATACTAGACTACTAG 321 123 409 Antisense
GTAAGTATACTGGTGACGCATTTGG 283 461 494 Antisense
GACGCATTTGGACGTCTTTTATTCA 523 377 508 Antisense
GGATTATGGGGAGCTATTGTACTTT 528 505 535 Antisense
TATTGTACTTTTACTTCCACTTCTT 588 665 549 Antisense
ACGTAGATGGCTTACAGCTCTCCGT 52 95 588 Antisense
AGCTCTCCGTGGTGGAGATGGACCA 555 79 603 Antisense
GAAGTTCGTCAGATTCTGGATTCTG 235 337 682 Antisense
Sequence Source Affymetrix Proprietary Database