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[178401_at]

Description F10A3.5 /REP_DB=WormBase Gene ID /WP=CE15771 /TR=O45340 /GB=CAB07345.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 10      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 7.4
(-2.4)
A 		2.5
(-3)
A 		4.4
(-2.8)
A 		54.4
(3)
M 		52
B 3.6
(-3)
A 		32.7
(1.2)
A 		7.1
(-2.5)
A 		45
(3)
M 		41
C 3.1
(-3)
A 		3.9
(-2.9)
A 		3.8
(-2.9)
A 		67.6
(3)
P 		65
avr 4.7
(-3) 		13
(-2) 		5.1
(-3) 		55.7
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 12.6
(-0.8)
A 		2.7
(-3)
A 		29.8
(3)
A 		10.9
(-1.2)
A 		9.8
(-1.4)
A 		7.7
(-1.9)
A 		27
B 20.4
(0.2)
A 		27.6
(1.6)
A 		28.4
(1.7)
A 		34.9
(3)
A 		6.1
(-2.6)
A 		3.8
(-3)
A 		31
C 12.9
(-1.2)
A 		4.5
(-2.6)
A 		2
(-3)
A 		38.1
(3)
A 		2.7
(-2.9)
A 		6.9
(-2.2)
A 		36
avr 15.3
(-0.5) 		11.6
(-1.5) 		20.1
(0.8) 		28
(3) 		6.2
(-3) 		6.1
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(-1.2)
A 		0.5
(-3)
A 		1.2
(-2.4)
A 		8
(3)
M 		8
B 1.1
(-3)
A 		8.1
(1.9)
A 		1.6
(-2.6)
A 		9.6
(3)
M 		9
C 1
(-3)
A 		1.1
(-2.9)
A 		1.3
(-2.8)
A 		11.4
(3)
P 		10
avr 1.6
(-2.9) 		3.2
(-1.7) 		1.4
(-3) 		9.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.3
(-1.5)
A 		0.9
(-3)
A 		6.5
(3)
A 		2.8
(-1)
A 		3
(-0.8)
A 		1.9
(-1.9)
A 		6
B 7.1
(1.4)
A 		9.2
(3)
A 		6.9
(1.2)
A 		9.2
(3)
A 		2.5
(-2.2)
A 		1.4
(-3)
A 		8
C 4.8
(0.6)
A 		1.4
(-2.3)
A 		0.5
(-3)
A 		7.7
(3)
A 		0.9
(-2.7)
A 		2.3
(-1.5)
A 		7
avr 4.7
(0.6) 		3.8
(-0.6) 		4.6
(0.4) 		6.6
(3) 		2.1
(-2.7) 		1.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14436
Sequence Type Exemplar sequence
Representative Public ID F10A3.5 NCBI
Target Description F10A3.5 /REP_DB=WormBase Gene ID /WP=CE15771 /TR=O45340 /GB=CAB07345.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074670 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-109) (str-109) mRNA, complete cds. 11/11 None
GENEFINDER00000000104 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16163189:16164807:-1 11/11 None
F10A3.5 ENSEMBL cdna:known chromosome:CEL140:V:16163268:16164807:-1 gene:F10A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16163267-16164807(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-109
Ensembl F10A3.5
Entrez Gene 184275 Entrez gene
SwissProt O45340 EMBL-EBI
WormBase CE15771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07345 Hypothetical protein F10A3.5 [Caenorhabditis elegans] ref|NP_507071.1| Seven TM Receptor family member (str-109) [Caenorhabditis elegans] 0.0
blast CAB07345 Hypothetical protein F10A3.5 [Caenorhabditis elegans] ref|NP_507071.1| Seven TM Receptor family member (str-109) [Caenorhabditis elegans] 1.0E-178
blast CAB07350 Hypothetical protein F10A3.15 [Caenorhabditis elegans] ref|NP_507075.2| Seven TM Receptor family member (str-111) [Caenorhabditis elegans] 1.0E-131
blast CAE46671 Hypothetical protein K05D4.9 [Caenorhabditis elegans] emb|CAE46675.1| Hypothetical protein K05D4.9 [Caenorhabditis elegans] ref|NP_001024031.1| K05D4.9 [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.8E-20
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507071.1 7 11-33,40-59,93-115,128-150,203-225,253-275,285-307
F10A3.5 7 11-33,40-59,93-115,128-150,203-225,253-275,285-307
GENEFINDER00000000104 7 11-33,40-59,93-115,128-150,203-225,253-275,285-307
Sequence
Target Sequence 
>C. ELEGANS:178401_AT
tttcggttacatcttcactttatcgatttttcttcaaaaaccttactatttgggtcatct
ttcttacttgtaattctgctatttggttcttctgctttctcgtattgaactctccgtctc
caatgaaagatgaagagctttttcctgaattttgggaatcttactgcctgaaaccaaatg
aatatacctacacaggacctcactactactacacagacaattcaactggagaatggaaat
ttcatattccgtcatttgtggctgagggctatacagctggcaatattgctgtggcatttg
tttttcttacatattttggctttcaaacttacaatcatcttaataaactagaagttgtgg
cgagcgtaaacttccgggagctccaaaatcaattgttcagaactttggtggtccagacta
tattcccaacaatctttttattttttccagtatcatgtttagttgtgttcccagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGGTTACATCTTCACTTTATCG 531 669 365 Antisense
TTGGGTCATCTTTCTTACTTGTAAT 259 709 414 Antisense
TCTGCTATTTGGTTCTTCTGCTTTC 396 609 439 Antisense
TTCTGCTTTCTCGTATTGAACTCTC 389 691 454 Antisense
GGGAATCTTACTGCCTGAAACCAAA 107 495 518 Antisense
ATTCCGTCATTTGTGGCTGAGGGCT 627 7 610 Antisense
TTGCTGTGGCATTTGTTTTTCTTAC 454 701 650 Antisense
GGCTTTCAAACTTACAATCATCTTA 521 537 682 Antisense
TTGTGGCGAGCGTAAACTTCCGGGA 513 707 719 Antisense
TTGTTCAGAACTTTGGTGGTCCAGA 252 703 757 Antisense
ATCATGTTTAGTTGTGTTCCCAGTT 347 29 816 Antisense
Sequence Source Affymetrix Proprietary Database