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[178400_at]

Description F39B2.7 /REP_DB=WormBase Gene ID /WP=CE19834 /TR=Q9XTZ1 /GB=CAB07393.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 97      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 170.3
(-2.3)
P 		147.8
(-3)
P 		157
(-2.7)
P 		330.1
(3)
P 		182
B 146.3
(-3)
P 		158.4
(-2.4)
P 		159.4
(-2.3)
P 		258.4
(3)
P 		112
C 187
(-1.3)
P 		132.9
(-2.6)
P 		116.9
(-3)
P 		365.3
(3)
P 		248
avr 167.9
(-2.2) 		146.4
(-2.9) 		144.4
(-3) 		317.9
(3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 172.6
(-1.3)
P 		145.9
(-2.4)
P 		131.9
(-3)
P 		195.1
(-0.4)
P 		224.7
(0.8)
P 		279.3
(3)
P 		147
B 106.7
(-3)
P 		105.3
(-3)
P 		169.7
(-1.1)
P 		201.3
(-0.2)
P 		246.9
(1.1)
P 		310.6
(3)
P 		205
C 113.7
(-2.9)
P 		175.4
(-1.3)
P 		143.2
(-2.1)
P 		109.1
(-3)
P 		233.8
(0.2)
P 		341.4
(3)
P 		232
avr 131
(-3) 		142.2
(-2.6) 		148.3
(-2.4) 		168.5
(-1.7) 		235.1
(0.5) 		310.4
(3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 62
(3)
P 		32.1
(-3)
P 		41.1
(-1.2)
P 		48.3
(0.3)
P 		30
B 46.7
(0.2)
P 		39.1
(-2.3)
P 		36.9
(-3)
P 		55.1
(3)
P 		18
C 61.9
(3)
P 		38.2
(-3)
P 		40.8
(-2.3)
P 		61.6
(2.9)
P 		24
avr 56.9
(3) 		36.5
(-3) 		39.6
(-2.1) 		55
(2.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 31.8
(-2.5)
P 		51.9
(0.5)
P 		28.7
(-3)
P 		49.5
(0.2)
P 		67.8
(3)
P 		68
(3)
P 		39
B 37.1
(-2.9)
P 		35.1
(-3)
P 		41.2
(-2.5)
P 		53.3
(-1.6)
P 		100.3
(1.8)
P 		115.8
(3)
P 		81
C 42.2
(-1.7)
P 		53.5
(-0.9)
P 		36.4
(-2.1)
P 		21.9
(-3)
P 		75.7
(0.5)
P 		114.3
(3)
P 		92
avr 37
(-2.9) 		46.8
(-1.9) 		35.4
(-3) 		41.6
(-2.4) 		81.3
(1.3) 		99.4
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1587
Sequence Type Exemplar sequence
Representative Public ID F39B2.7 NCBI
Target Description F39B2.7 /REP_DB=WormBase Gene ID /WP=CE19834 /TR=Q9XTZ1 /GB=CAB07393.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061172 NCBI Caenorhabditis elegans F39B2.7 (F39B2.7) mRNA, complete cds. 11/11 None
SNAP00000018502 ENSEMBL cdna:SNAP chromosome:CEL140:I:14778821:14783114:-1 11/11 None
GENEFINDER00000018509 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14778821:14783114:-1 11/11 None
F39B2.7 ENSEMBL cdna:known chromosome:CEL140:I:14778817:14783125:-1 gene:F39B2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14778751-14783045(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39B2.7
Entrez Gene 3564835 Entrez gene
SwissProt Q9XTZ1 EMBL-EBI
WormBase CE19834 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262189_AT tRNA modification GTPase, putative at
CANINE_2:CFAAFFX.23642.1.S1_S_AT similar to GTP binding protein 3 (mitochondrial) isoform V cfa
DROSOPHILA_2:1636997_AT dm
DROSGENOME1:142207_AT dm
HU35KSUBA:RC_AA112063_AT GTP binding protein 3 (mitochondrial) hs
U133_X3P:HS2.334885.3.S1_3P_S_AT GTP binding protein 3 (mitochondrial) hs
U133_X3P:HS.246112.3.S1_3P_AT GTP binding protein 3 (mitochondrial) hs
HG-U133_PLUS_2:1555062_S_AT GTP binding protein 3 (mitochondrial) hs
HG-U133A_2:213835_X_AT GTP binding protein 3 (mitochondrial) hs
HG-U133_PLUS_2:213835_X_AT GTP binding protein 3 (mitochondrial) hs
HG-U133A:213835_X_AT GTP binding protein 3 (mitochondrial) hs
MOUSE430_2:1450980_AT GTP binding protein 3 mm
MOE430A:1450980_AT GTP binding protein 3 mm
MOUSE430A_2:1450980_AT GTP binding protein 3 mm
MG-U74CV2:165528_I_AT GTP binding protein 3 mm
MU19KSUBA:TC19876_AT GTP binding protein 3 (Gtpbp3), mRNA mm
RAE230A:1398438_AT GTP binding protein 3 (predicted) rn
RAT230_2:1398438_AT GTP binding protein 3 (predicted) rn
YEAST_2:1771803_AT Mitochondrial protein, forms a heterodimer complex with Mto1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; similar to human GTPBP3 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6400 tRNA modification inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3924 GTPase activity inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07393 Hypothetical protein F39B2.7 [Caenorhabditis elegans] ref|NP_493573.1| F39B2.7 [Caenorhabditis elegans] 0.0
blast CAE72575 Hypothetical protein CBG19762 [Caenorhabditis briggsae] 0.0
blast XP_454294 unnamed protein product [Kluyveromyces lactis] emb|CAG99381.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140] 2.0E-63
Sequence
Target Sequence 
>C. ELEGANS:178400_AT
ttgttagctcgattcctggaaccacgagagatagtttggaaacaatcattcaaattaacg
gagttcgatgccgtctcacagacactgctggagttcgacaaaaaactaatgacgtcattg
aggcagaaggtattcgacgtgctcaaaaacgaatccaatcagctgacattatctgcgttg
tcgtggatccacaattcacgtcggatgacgatgttgaatcgattttgaatgacgtggaag
tgatgcgaaatcgcgaagctcgtgtgattattgcaaagaataagtctgatctgagtctga
agtatccaaaacttccctcaaatttcactactgtatctacaaatgctaccacagatactg
gctgcaaacaacttcaaaactgtttgggagaaattgtagatgatctgtgtcctgaagcaa
gttatttactagatgcagatctgttaagaagatgctcattcgaattggagtcagctgtaa
cgtgtaacgacgcagcaatcatgtgttcacatctggaagttgccttggaacaaatcggag
agctcaccgagggaattgtcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTAGCTCGATTCCTGGAACCAC 534 703 722 Antisense
TAACGGAGTTCGATGCCGTCTCACA 67 573 777 Antisense
CCGTCTCACAGACACTGCTGGAGTT 408 265 792 Antisense
GGCAGAAGGTATTCGACGTGCTCAA 177 535 843 Antisense
CATTATCTGCGTTGTCGTGGATCCA 8 217 888 Antisense
GTGGATCCACAATTCACGTCGGATG 458 489 904 Antisense
AACTTCCCTCAAATTTCACTACTGT 270 139 1031 Antisense
ATGCTACCACAGATACTGGCTGCAA 251 43 1064 Antisense
GATGATCTGTGTCCTGAAGCAAGTT 16 411 1120 Antisense
AACGACGCAGCAATCATGTGTTCAC 497 145 1207 Antisense
GAGCTCACCGAGGGAATTGTCACTG 94 389 1261 Antisense
Sequence Source Affymetrix Proprietary Database