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[178398_at]

Description R02D5.6 /REP_DB=WormBase Gene ID /WP=CE12494 /TR=Q21638 /GB=CAB01435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 68.7
(3)
A 		59.8
(1.8)
A 		24.1
(-3)
A 		41.6
(-0.6)
A 		45
B 15.9
(-3)
A 		64
(1)
A 		38.2
(-1.1)
A 		87.8
(3)
A 		72
C 53.6
(-0.2)
A 		26.2
(-3)
A 		37.8
(-1.8)
A 		85.9
(3)
A 		60
avr 46.1
(-1) 		50
(-0.4) 		33.4
(-3) 		71.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 4.3
(-3)
A 		41.5
(0.8)
A 		62.5
(3)
A 		23.6
(-1)
A 		4.4
(-3)
A 		37.8
(0.5)
A 		58
B 64.6
(3)
A 		37.6
(-0.6)
A 		35.5
(-0.9)
A 		20.5
(-2.9)
A 		42.3
(0)
A 		19.6
(-3)
A 		45
C 45.9
(2.1)
A 		48.6
(2.4)
A 		53.5
(3)
A 		15.5
(-1.5)
A 		3
(-3)
A 		12.6
(-1.9)
A 		51
avr 38.3
(0.8) 		42.6
(1.6) 		50.5
(3) 		19.9
(-2.4) 		16.6
(-3) 		23.3
(-1.8) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25
(3)
A 		13
(-0.8)
A 		6.3
(-2.9)
A 		6.1
(-3)
A 		19
B 5.1
(-3)
A 		15.8
(1.7)
A 		8.9
(-1.3)
A 		18.7
(3)
A 		14
C 17.7
(3)
A 		7.5
(-3)
A 		13.2
(0.4)
A 		14.5
(1.1)
A 		10
avr 15.9
(3) 		12.1
(-0.6) 		9.5
(-3) 		13.1
(0.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.8
(-3)
A 		14.8
(3)
A 		13.6
(2.5)
A 		6
(-0.8)
A 		1.3
(-2.8)
A 		9.2
(0.6)
A 		14
B 22.5
(3)
A 		12.5
(-0.5)
A 		8.6
(-1.9)
A 		5.4
(-3)
A 		17.2
(1.1)
A 		7.3
(-2.3)
A 		17
C 17
(3)
A 		14.8
(2.2)
A 		13.6
(1.7)
A 		3.1
(-2.2)
A 		1
(-3)
A 		4.2
(-1.8)
A 		16
avr 13.4
(2.6) 		14
(3) 		11.9
(1.6) 		4.8
(-3) 		6.5
(-1.9) 		6.9
(-1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178398_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14770
Sequence Type Exemplar sequence
Representative Public ID R02D5.6 NCBI
Target Description R02D5.6 /REP_DB=WormBase Gene ID /WP=CE12494 /TR=Q21638 /GB=CAB01435.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074195(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074195 NCBI Caenorhabditis elegans R02D5.6 (R02D5.6) mRNA, complete cds. 11/11 None
R02D5.6 ENSEMBL cdna:known chromosome:CEL140:V:14513353:14517121:-1 gene:R02D5.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007918 8/11 Cross Hyb Matching Probes None
SNAP00000007919 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007922 6/11 Cross Hyb Matching Probes None
GENEFINDER00000007927 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14513352-14517121(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D5.6
Entrez Gene 187523 Entrez gene
SwissProt Q21638 EMBL-EBI
WormBase CE12494 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01435 Hypothetical protein R02D5.6 [Caenorhabditis elegans] ref|NP_506596.1| R02D5.6 [Caenorhabditis elegans] 0.0
blast CAE60881 Hypothetical protein CBG04593 [Caenorhabditis briggsae] 1.0E-111
blast CAE67558 Hypothetical protein CBG13084 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506596.1 10 27-49,62-84,114-136,149-171,214-236,257-279,294-311,332-354,385-402,423-441
R02D5.6 10 27-49,62-84,114-136,149-171,214-236,257-279,294-311,332-354,385-402,423-441
Sequence
Target Sequence 
>C. ELEGANS:178398_AT
cgattattttgctagcttcaccggcggttgtcatgttgactattagatgggatattactg
gatggggagatattgaagttgcaattacctatgcaatgcctggattcttatcagttgtta
atactatcatatcattccggtttcgaaaagagctacgatctcagttttataatttaattg
gaaaacaaatggatacattcacagtcttgactgctctcatcgtaatctttgttttctctt
tcctaactctccgattaatcatcaaatactgcaaaccatggtcttcgacagtagcatcct
caccatcagccacagacacggaggcacccgatttcgcacgtgtcggaaatcatctgttcg
tctcaaacactccacacacatgtatgttaccctttccgtttgtgattgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTATTTTGCTAGCTTCACCGGC 665 247 812 Antisense
CTTCACCGGCGGTTGTCATGTTGAC 25 219 827 Antisense
CCTATGCAATGCCTGGATTCTTATC 87 269 899 Antisense
ACTGCTCTCATCGTAATCTTTGTTT 194 99 1021 Antisense
TCTTTCCTAACTCTCCGATTAATCA 5 613 1048 Antisense
CATGGTCTTCGACAGTAGCATCCTC 397 209 1088 Antisense
CCACAGACACGGAGGCACCCGATTT 210 275 1121 Antisense
CACCCGATTTCGCACGTGTCGGAAA 678 197 1136 Antisense
GTGTCGGAAATCATCTGTTCGTCTC 355 487 1151 Antisense
CACACATGTATGTTACCCTTTCCGT 637 193 1186 Antisense
TTACCCTTTCCGTTTGTGATTGATG 249 681 1198 Antisense
Sequence Source Affymetrix Proprietary Database