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[178397_s_at]

Description ZK899.5 /REP_DB=WormBase Gene ID /WP=CE01122 /TR=Q23661 /GB=CAA85498.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 1.3
(-3)
A 		2.5
(-0.8)
A 		3.4
(0.8)
A 		4.6
(3)
A 		3
B 2
(1.9)
A 		2.2
(3)
A 		1.8
(0.8)
A 		1.1
(-3)
A 		1
C 3.6
(-2.6)
A 		2.2
(-2.9)
A 		1.9
(-3)
A 		26.5
(3)
A 		25
avr 2.3
(-3) 		2.3
(-3) 		2.4
(-2.9) 		10.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 2.6
(-2.8)
A 		1.3
(-3)
A 		4.6
(-2.6)
A 		1.8
(-2.9)
A 		1.9
(-2.9)
A 		50.4
(3)
A 		49
B 1.5
(-3)
A 		1.3
(-3)
A 		1.6
(-3)
A 		2.4
(-2.9)
A 		3.8
(-2.7)
A 		52.1
(3)
A 		51
C 1.1
(-3)
A 		4
(-2.4)
A 		3.1
(-2.6)
A 		3.4
(-2.5)
A 		1.6
(-2.9)
A 		31.1
(3)
A 		30
avr 1.7
(-3) 		2.2
(-2.9) 		3.1
(-2.8) 		2.5
(-2.9) 		2.4
(-2.9) 		44.5
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.5
(-3)
A 		0.5
(-3)
A 		0.9
(3)
A 		0.7
(-0)
A 		0
B 0.6
(3)
A 		0.5
(1.5)
A 		0.4
(0)
A 		0.2
(-3)
A 		0
C 1.2
(-2.1)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		4.5
(3)
A 		4
avr 0.8
(-1.6) 		0.5
(-3) 		0.7
(-2.1) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.5
(-3)
A 		1
(-2.7)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		12.3
(3)
A 		12
B 0.5
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.6
(-2.9)
A 		1.5
(-2.7)
A 		19.4
(3)
A 		19
C 0.4
(-3)
A 		1.2
(-2.5)
A 		0.8
(-2.8)
A 		0.7
(-2.8)
A 		0.5
(-2.9)
A 		10.4
(3)
A 		10
avr 0.5
(-3) 		0.7
(-2.9) 		0.7
(-2.9) 		0.6
(-3) 		0.9
(-2.8) 		14
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178397_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16845
Sequence Type Exemplar sequence
Representative Public ID ZK899.5 NCBI
Target Description ZK899.5 /REP_DB=WormBase Gene ID /WP=CE01122 /TR=Q23661 /GB=CAA85498.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077191(11), NM_077192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077191 NCBI Caenorhabditis elegans ZK899.5 (ZK899.5) mRNA, complete cds. 11/11 None
NM_077192 NCBI Caenorhabditis elegans ZK899.6 (ZK899.6) mRNA, complete cds. 11/11 None
SNAP00000025044 ENSEMBL cdna:SNAP chromosome:CEL140:X:9459841:9460863:-1 11/11 None
GENEFINDER00000025056 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9459841:9460863:-1 11/11 None
SNAP00000025046 ENSEMBL cdna:SNAP chromosome:CEL140:X:9463286:9464320:1 11/11 None
GENEFINDER00000025054 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9463286:9466375:1 11/11 None
ZK899.5 ENSEMBL cdna:known chromosome:CEL140:X:9459841:9460863:-1 gene:ZK899.5 11/11 None
ZK899.6 ENSEMBL cdna:known chromosome:CEL140:X:9463286:9464320:1 gene:ZK899.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9463285-9464307(+) 96.55 96.55
chrX:9459840-9460863(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZK899.5
ZK899.6
Entrez Gene 191456 Entrez gene
191457 Entrez gene
SwissProt Q23661 EMBL-EBI
Q23662 EMBL-EBI
WormBase CE01122 Wormbase
CE01123 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85498 Hypothetical protein ZK899.5 [Caenorhabditis elegans] ref|NP_509592.1| ZK899.5 [Caenorhabditis elegans] 1.0E-167
blast CAA85499 Hypothetical protein ZK899.6 [Caenorhabditis elegans] ref|NP_509593.1| ZK899.6 [Caenorhabditis elegans] 1.0E-158
Sequence
Target Sequence 
>C. ELEGANS:178397_S_AT
gcacgaactacaaatccgagtactcaacgttcattcaaaattcaaaagctctatttggaa
acatgcttacttcatatgatagtctctgtaatctcttccagtactttgaaactgatgagc
gcatcattcaaattagagaggatctaaagcagccattgcccgaaggagttatcccaaatt
tggagcctgttggacctgatcttcatttcgatgaactctcggagtacttcattgaaaagt
accaggattacatgattgacgtttcgaatatgattgatgtcgtctttgttcgttatttga
tcaagaaacagaaagatgaaagaactggaagtattgtctactctttcccaactaaaagaa
tgtccagaagcattgatcacatggaagacgctactgacacagaaacttccgatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGAACTACAAATCCGAGTACTC 214 315 350 Antisense
ATCCGAGTACTCAACGTTCATTCAA 447 37 363 Antisense
GATAGTCTCTGTAATCTCTTCCAGT 573 425 427 Antisense
GAGGATCTAAAGCAGCCATTGCCCG 214 403 487 Antisense
GCCATTGCCCGAAGGAGTTATCCCA 90 281 501 Antisense
CCTGTTGGACCTGATCTTCATTTCG 340 265 535 Antisense
GAACTCTCGGAGTACTTCATTGAAA 423 363 562 Antisense
GATGTCGTCTTTGTTCGTTATTTGA 451 409 625 Antisense
GGAAGTATTGTCTACTCTTTCCCAA 642 531 676 Antisense
CACATGGAAGACGCTACTGACACAG 73 197 727 Antisense
TACTGACACAGAAACTTCCGATGTT 488 647 741 Antisense
Sequence Source Affymetrix Proprietary Database