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[178396_at]

Description F47G4.1 /REP_DB=WormBase Gene ID /WP=CE18700 /TR=Q9XTS6 /GB=CAB16308.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 4
(-3)
A 		33.4
(3)
A 		6
(-2.6)
A 		20.6
(0.4)
A 		29
B 5.5
(-2.1)
A 		7.7
(-1.4)
A 		2.2
(-3)
A 		23.4
(3)
A 		21
C 4.6
(-3)
A 		15.1
(3)
A 		5.8
(-2.3)
A 		8
(-1.1)
A 		11
avr 4.7
(-3) 		18.7
(3) 		4.7
(-3) 		17.3
(2.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 3.3
(-2.8)
A 		19
(3)
A 		3.2
(-2.9)
A 		2.8
(-3)
A 		6.2
(-1.7)
A 		3.4
(-2.8)
A 		16
B 5.3
(-2.8)
A 		4.5
(-3)
A 		31.6
(3)
A 		8.8
(-2)
A 		4.3
(-3)
A 		12.9
(-1.1)
A 		27
C 36.8
(3)
A 		2.2
(-3)
A 		6.8
(-2.2)
A 		28.8
(1.6)
A 		15.1
(-0.8)
A 		2.8
(-2.9)
A 		35
avr 15.1
(3) 		8.6
(-1.5) 		13.9
(2.2) 		13.5
(1.9) 		8.5
(-1.6) 		6.4
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(-3)
A 		7.2
(3)
A 		1.6
(-2.9)
A 		3
(-1.4)
A 		6
B 1.8
(-1.3)
A 		1.9
(-1.1)
A 		0.5
(-3)
A 		5
(3)
A 		5
C 1.5
(-2.8)
A 		4.3
(3)
A 		2
(-1.8)
A 		1.4
(-3)
A 		3
avr 1.6
(-2.6) 		4.5
(3) 		1.4
(-3) 		3.1
(0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.8
(3)
A 		0.7
(-2.9)
A 		0.7
(-2.9)
A 		1.9
(-1.7)
A 		0.8
(-2.8)
A 		6
B 1.8
(-2.7)
A 		1.5
(-3)
A 		7.7
(3)
A 		2.3
(-2.2)
A 		1.8
(-2.7)
A 		4.8
(0.2)
A 		6
C 13.6
(3)
A 		0.7
(-3)
A 		1.7
(-2.5)
A 		5.8
(-0.6)
A 		4.9
(-1)
A 		0.9
(-2.9)
A 		13
avr 5.3
(3) 		3
(-1.5) 		3.4
(-0.7) 		2.9
(-1.6) 		2.9
(-1.6) 		2.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1990
Sequence Type Exemplar sequence
Representative Public ID F47G4.1 NCBI
Target Description F47G4.1 /REP_DB=WormBase Gene ID /WP=CE18700 /TR=Q9XTS6 /GB=CAB16308.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061049 NCBI Caenorhabditis elegans F47G4.1 (F47G4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000012302 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14058561:14065012:-1 11/11 None
F47G4.1 ENSEMBL cdna:known chromosome:CEL140:I:14062711:14065012:-1 gene:F47G4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012290 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14062641-14064943(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47G4.1
Entrez Gene 185945 Entrez gene
SwissProt Q9XTS6 EMBL-EBI
WormBase CE18700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16308 Hypothetical protein F47G4.1 [Caenorhabditis elegans] ref|NP_493450.1| F47G4.1 [Caenorhabditis elegans] 1.0E-165
blast CAB16308 Hypothetical protein F47G4.1 [Caenorhabditis elegans] ref|NP_493450.1| F47G4.1 [Caenorhabditis elegans] 1.0E-161
blast CAE71827 Hypothetical protein CBG18868 [Caenorhabditis briggsae] 3.0E-78
blast CAE71827 Hypothetical protein CBG18868 [Caenorhabditis briggsae] 2.0E-76
blast CAB16312 Hypothetical protein F47G4.8 [Caenorhabditis elegans] ref|NP_493449.1| F47G4.8 [Caenorhabditis elegans] 1.0E-67
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 6.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012302 1 483-505
Sequence
Target Sequence 
>C. ELEGANS:178396_AT
aggagccaacttctttacagggtcactactttacaaatactacgtatcaaccgtatacgg
ttagctacagcgccccaacttggacatttgccaactctacacaattggagtgtcctacca
actatgcactttttgtgagagatttggggccgtggtgtatgaaggttattcaacactatg
cctgctgtaacaaaacgattgcagccacaatgtgcaacagttacggtgctcagctgagcg
ggctcgactcgacggcggagtacgactttatgcttgccggaagttggccaattttcaaaa
acgtcaccacaaacaagatcggtagcacacaatactacgcgacaggggtatgggtagatg
gagctcggactttggcttgtatgggaaataccacgtatccttgtaatactacacaggcgt
tttccttcacggaccccaccttatcctccccgcctggcggatacctatggctacctggca
ggcctgacggaggggatgccccggctgatggtattgtgctaaatttgtacactactgaac
tttatggaatggaagatactccatccagtgagccagtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGCCAACTTCTTTACAGGGTCA 475 49 245 Antisense
GGACATTTGCCAACTCTACACAATT 651 525 326 Antisense
GTGTCCTACCAACTATGCACTTTTT 288 487 354 Antisense
GGTTATTCAACACTATGCCTGCTGT 457 505 408 Antisense
GCTCGACTCGACGGCGGAGTACGAC 309 295 486 Antisense
GGAGTACGACTTTATGCTTGCCGGA 164 517 501 Antisense
TGGAGCTCGGACTTTGGCTTGTATG 601 547 603 Antisense
ATACTACACAGGCGTTTTCCTTCAC 171 1 650 Antisense
TACCTGGCAGGCCTGACGGAGGGGA 650 643 716 Antisense
TGCCCCGGCTGATGGTATTGTGCTA 699 583 741 Antisense
GATACTCCATCCAGTGAGCCAGTTA 558 423 799 Antisense
Sequence Source Affymetrix Proprietary Database