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[178395_at]

Description C07B5.2 /REP_DB=WormBase Gene ID /WP=CE00892 /TR=Q17775 /GB=CAA86409.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 9.1
(-3)
A 		16.9
(-2)
A 		16
(-2.1)
A 		57.8
(3)
A 		49
B 11.5
(-2.4)
A 		15.6
(-1.6)
A 		8.8
(-3)
A 		37.1
(3)
A 		28
C 18.9
(-2.3)
A 		16.9
(-3)
A 		31.7
(2.3)
A 		33.6
(3)
A 		17
avr 13.2
(-3) 		16.5
(-2.3) 		18.8
(-1.9) 		42.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 27.2
(-2.3)
A 		32.5
(-0.8)
A 		39
(1.1)
A 		45.5
(3)
P 		24.8
(-3)
A 		34.7
(-0.1)
A 		21
B 6.4
(-3)
A 		27.7
(-1)
P 		31.4
(-0.7)
P 		32.8
(-0.5)
A 		70.8
(3)
P 		27.2
(-1.1)
P 		64
C 7.8
(-2.9)
A 		36.5
(-1.2)
A 		6
(-3)
A 		110.3
(3)
P 		54
(-0.2)
P 		41.6
(-1)
P 		104
avr 13.8
(-3) 		32.2
(-0.8) 		25.5
(-1.6) 		62.9
(3) 		49.9
(1.4) 		34.5
(-0.5) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.3
(-3)
A 		3.7
(-2.5)
A 		4.2
(-2)
A 		8.5
(3)
A 		5
B 3.7
(-1.3)
A 		3.9
(-1.1)
A 		2
(-3)
A 		7.9
(3)
A 		6
C 6.3
(-1.6)
A 		4.8
(-3)
A 		11.1
(3)
A 		5.7
(-2.1)
A 		6
avr 4.4
(-2.5) 		4.1
(-3) 		5.8
(0.1) 		7.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5
(-3)
A 		11.6
(3)
A 		8.5
(0.2)
A 		11.5
(2.9)
P 		7.5
(-0.7)
A 		8.4
(0.1)
A 		7
B 2.2
(-3)
A 		9.2
(-1.4)
P 		7.6
(-1.8)
P 		8.7
(-1.5)
A 		28.7
(3)
P 		10.1
(-1.2)
P 		27
C 2.9
(-2.6)
A 		11.1
(-0.2)
A 		1.5
(-3)
A 		22.2
(3)
P 		17.5
(1.6)
P 		13.9
(0.6)
P 		21
avr 3.4
(-3) 		10.6
(-0) 		5.9
(-2) 		14.1
(1.4) 		17.9
(3) 		10.8
(0.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17229
Sequence Type Exemplar sequence
Representative Public ID C07B5.2 NCBI
Target Description C07B5.2 /REP_DB=WormBase Gene ID /WP=CE00892 /TR=Q17775 /GB=CAA86409.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077199 NCBI Caenorhabditis elegans C07B5.2 (C07B5.2) mRNA, complete cds. 11/11 None
C07B5.2 ENSEMBL cdna:known chromosome:CEL140:X:9516439:9517022:-1 gene:C07B5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9516438-9517022(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07B5.2
Entrez Gene 182359 Entrez gene
SwissProt Q17775 EMBL-EBI
WormBase CE00892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86409 Hypothetical protein C07B5.2 [Caenorhabditis elegans] ref|NP_509600.1| C07B5.2 [Caenorhabditis elegans] 4.0E-64
blast CAE69807 Hypothetical protein CBG16117 [Caenorhabditis briggsae] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178395_AT
aaacgaagttttgattcatctggaaaaaatcgagttggacgctatcaaaattcttaaaat
aatcagaaaccctatatatcaaattcacatttactgtaattgctgggatacattggttga
tatacaatttcaaatacgagactttcgttttatgctgagtaagaacacgggggttttcaa
tagagagaagtataaagcatttttggaccatgttcatttatcactggaacactgtaacaa
ggcagcagaaaatccgtatccaaactgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGAAGTTTTGATTCATCTGGAA 176 125 63 Antisense
GAGTTGGACGCTATCAAAATTCTTA 149 375 94 Antisense
GAAACCCTATATATCAAATTCACAT 61 359 128 Antisense
GCTGGGATACATTGGTTGATATACA 338 295 164 Antisense
ACGAGACTTTCGTTTTATGCTGAGT 220 93 198 Antisense
GAACACGGGGGTTTTCAATAGAGAG 96 343 225 Antisense
AAAGCATTTTTGGACCATGTTCATT 5 125 256 Antisense
GGACCATGTTCATTTATCACTGGAA 525 523 267 Antisense
ATCACTGGAACACTGTAACAAGGCA 460 27 282 Antisense
AAGGCAGCAGAAAATCCGTATCCAA 705 159 301 Antisense
AGAAAATCCGTATCCAAACTGCAGA 296 73 309 Antisense
Sequence Source Affymetrix Proprietary Database