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[178394_at]

Description F14F8.1 /REP_DB=WormBase Gene ID /WP=CE18585 /TR=Q9XU38 /GB=CAB07184.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 20      6grp_total > 18      4grp_total > 20      6grp_cgc > 02      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 74.8
(-3)
P 		108.3
(0)
P 		79.7
(-2.6)
A 		141.7
(3)
P 		67
B 87.1
(1.4)
A 		84
(1)
P 		50.6
(-3)
A 		100.5
(3)
A 		50
C 99.6
(0.9)
P 		88.8
(-0.4)
P 		66.5
(-3)
P 		117.6
(3)
P 		51
avr 87.2
(-0.6) 		93.7
(0.1) 		65.6
(-3) 		119.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 71
(1.5)
A 		34.2
(-3)
A 		83.8
(3)
P 		58.4
(-0.1)
P 		45.7
(-1.6)
A 		56.5
(-0.3)
A 		50
B 67.7
(3)
P 		60.2
(1.6)
P 		60.1
(1.6)
P 		39.9
(-2.2)
A 		58.7
(1.3)
P 		35.5
(-3)
M 		32
C 57.8
(1.7)
A 		73.3
(3)
A 		4.1
(-3)
A 		54.8
(1.4)
A 		63.3
(2.1)
P 		57.9
(1.7)
P 		69
avr 65.5
(3) 		55.9
(-0.6) 		49.3
(-3) 		51
(-2.4) 		55.9
(-0.6) 		50
(-2.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 27.2
(3)
P 		23.5
(-0.4)
P 		20.8
(-2.9)
A 		20.7
(-3)
P 		7
B 27.8
(3)
A 		20.7
(0.4)
P 		11.7
(-3)
A 		21.4
(0.6)
A 		16
C 33
(3)
P 		25.5
(-0.4)
P 		23.2
(-1.5)
P 		19.8
(-3)
P 		13
avr 29.3
(3) 		23.2
(-0.4) 		18.6
(-3) 		20.6
(-1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.1
(-2.1)
A 		12.2
(-3)
A 		18.2
(3)
P 		14.8
(-0.4)
P 		13.8
(-1.4)
A 		13.7
(-1.5)
A 		6
B 23.6
(2.9)
P 		20
(1.3)
P 		14.6
(-1.2)
P 		10.6
(-3)
A 		23.8
(3)
P 		13.2
(-1.8)
M 		13
C 21.4
(2.7)
A 		22.4
(3)
A 		1.1
(-3)
A 		11
(-0.2)
A 		20.5
(2.5)
P 		19.4
(2.2)
P 		21
avr 19.4
(3) 		18.2
(2.1) 		11.3
(-3) 		12.1
(-2.4) 		19.4
(3) 		15.4
(0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13925
Sequence Type Exemplar sequence
Representative Public ID F14F8.1 NCBI
Target Description F14F8.1 /REP_DB=WormBase Gene ID /WP=CE18585 /TR=Q9XU38 /GB=CAB07184.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074817 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-61) (str-61) mRNA, complete cds. 11/11 None
SNAP00000022522 ENSEMBL cdna:SNAP chromosome:CEL140:V:16671921:16673872:-1 11/11 None
GENEFINDER00000022529 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16670273:16672751:-1 9/11 None
F14F8.1 ENSEMBL cdna:known chromosome:CEL140:V:16671921:16673872:-1 gene:F14F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16671920-16673872(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-61
Ensembl F14F8.1
Entrez Gene 184475 Entrez gene
SwissProt Q9XU38 EMBL-EBI
WormBase CE18585 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07184 Hypothetical protein F14F8.1 [Caenorhabditis elegans] ref|NP_507218.1| Seven TM Receptor family member (str-61) [Caenorhabditis elegans] 0.0
blast CAB07184 Hypothetical protein F14F8.1 [Caenorhabditis elegans] ref|NP_507218.1| Seven TM Receptor family member (str-61) [Caenorhabditis elegans] 1.0E-176
blast CAB07185 Hypothetical protein F14F8.9 [Caenorhabditis elegans] ref|NP_507217.1| F14F8.9 [Caenorhabditis elegans] 1.0E-112
blast NP_503907 Seven TM Receptor family member (str-64) [Caenorhabditis elegans] gb|AAC48112.1| Seven tm receptor protein 64 [Caenorhabditis elegans] 2.0E-86
blast NP_503907 Seven TM Receptor family member (str-64) [Caenorhabditis elegans] gb|AAC48112.1| Seven tm receptor protein 64 [Caenorhabditis elegans] 3.0E-86
blast AAC04405 Seven tm receptor protein 63 [Caenorhabditis elegans] ref|NP_503931.1| Seven TM Receptor family member (str-63) [Caenorhabditis elegans] 1.0E-85
blast AAC04405 Seven tm receptor protein 63 [Caenorhabditis elegans] ref|NP_503931.1| Seven TM Receptor family member (str-63) [Caenorhabditis elegans] 2.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507218.1 7 10-31,43-65,85-107,131-153,196-218,245-267,282-304
F14F8.1 7 10-31,43-65,85-107,131-153,196-218,245-267,282-304
SNAP00000022522 7 10-31,43-65,85-107,131-153,196-218,245-267,282-304
GENEFINDER00000022529 3 53-75,102-124,139-161
Sequence
Target Sequence 
>C. ELEGANS:178394_AT
ggatgcttatatgtcttcttgcttcattttttgtgtgcttatgataagtatgctgatgat
tatatgaaggatatagtactccaatcttatcaattaccaatcacacaagttcaaagattc
aatattctgccatatcaagaagatggctcactacgttgggaaaatctcggtttgcttcta
tacggactagtcatcaccctttccggttatttagttatcctgtattgtggcatcaagatg
cggttgaataggaaaaaagagctctctaaacgctcagcagctcatcaagagctggaagct
cagttcttcaaagctctcattgcacagagcctcggcccaactatatttttagttttacca
gttgcgccaatattggcaagtcccctgattcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCTTATATGTCTTCTTGCTTC 339 513 433 Antisense
GTCTTCTTGCTTCATTTTTTGTGTG 58 469 445 Antisense
GAAGATGGCTCACTACGTTGGGAAA 168 339 571 Antisense
ATCTCGGTTTGCTTCTATACGGACT 213 25 596 Antisense
TATACGGACTAGTCATCACCCTTTC 381 659 611 Antisense
TCATCACCCTTTCCGGTTATTTAGT 247 615 623 Antisense
CTCTAAACGCTCAGCAGCTCATCAA 123 229 696 Antisense
GTTCTTCAAAGCTCTCATTGCACAG 431 443 735 Antisense
GCCTCGGCCCAACTATATTTTTAGT 371 273 761 Antisense
TTAGTTTTACCAGTTGCGCCAATAT 134 681 781 Antisense
AATATTGGCAAGTCCCCTGATTCCA 492 173 801 Antisense
Sequence Source Affymetrix Proprietary Database