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[178393_at]

Description ZK899.1 /REP_DB=WormBase Gene ID /WP=CE01118 /TR=Q23659 /GB=CAA85496.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 28      4grp_high_8_8 > 31      6grp_highest_nonorm > 62      6grp_total > 34      4grp_total > 0      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 407.2
(3)
P 		325
(-3)
P 		375.5
(0.7)
P 		406.1
(2.9)
P 		82
B 262.2
(-3)
P 		336.6
(1.5)
P 		362.2
(3)
P 		350.9
(2.3)
P 		100
C 368.6
(1.2)
P 		325.5
(-3)
P 		387.4
(3)
P 		374.8
(1.8)
P 		62
avr 346
(-0.9) 		329
(-3) 		375
(2.7) 		377.3
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 476.7
(0.4)
P 		484.6
(0.6)
P 		562.7
(3)
P 		459.2
(-0.2)
P 		366.5
(-3)
P 		417.9
(-1.4)
P 		196
B 656.7
(3)
P 		547.4
(0.8)
P 		589.1
(1.6)
P 		359.2
(-3)
P 		416.1
(-1.9)
P 		438
(-1.4)
P 		298
C 490.6
(0)
P 		566.4
(2.4)
P 		584.9
(3)
P 		472.4
(-0.5)
P 		453.6
(-1.1)
P 		393.2
(-3)
P 		192
avr 541.3
(1.6) 		532.8
(1.3) 		578.9
(3) 		430.3
(-2.3) 		412.1
(-3) 		416.4
(-2.8) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 148.3
(3)
P 		70.5
(-2.3)
P 		98.2
(-0.4)
P 		59.5
(-3)
P 		89
B 83.6
(2.8)
P 		83.1
(2.5)
P 		83.9
(3)
P 		74.8
(-3)
P 		9
C 122
(1.9)
P 		93.6
(-0.5)
P 		135
(3)
P 		63.2
(-3)
P 		72
avr 118
(3) 		82.4
(-1.1) 		105.7
(1.6) 		65.8
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 87.9
(-3)
P 		172.3
(3)
P 		122.5
(-0.5)
P 		116.5
(-1)
P 		110.6
(-1.4)
P 		101.8
(-2)
P 		84
B 228.5
(3)
P 		182.2
(0.9)
P 		143
(-0.8)
P 		95.2
(-3)
P 		169.1
(0.3)
P 		163.3
(0.1)
P 		133
C 181.9
(3)
P 		172.8
(2.4)
P 		148.9
(0.7)
P 		95
(-3)
P 		146.8
(0.6)
P 		131.6
(-0.5)
P 		87
avr 166.1
(2.2) 		175.8
(3) 		138.1
(-0.1) 		102.2
(-3) 		142.2
(0.3) 		132.2
(-0.6) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17276
Sequence Type Exemplar sequence
Representative Public ID ZK899.1 NCBI
Target Description ZK899.1 /REP_DB=WormBase Gene ID /WP=CE01118 /TR=Q23659 /GB=CAA85496.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077186 NCBI Caenorhabditis elegans ZK899.1 (ZK899.1) mRNA, complete cds. 11/11 None
SNAP00000025034 ENSEMBL cdna:SNAP chromosome:CEL140:X:9446594:9447349:1 11/11 None
GENEFINDER00000025055 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9446594:9447349:1 11/11 None
ZK899.1 ENSEMBL cdna:known chromosome:CEL140:X:9446594:9447542:1 gene:ZK899.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9446593-9447542(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK899.1
Entrez Gene 191453 Entrez gene
SwissProt Q23659 EMBL-EBI
WormBase CE01118 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85496 Hypothetical protein ZK899.1 [Caenorhabditis elegans] ref|NP_509587.1| ZK899.1 [Caenorhabditis elegans] 3.0E-81
blast CAA85496 Hypothetical protein ZK899.1 [Caenorhabditis elegans] ref|NP_509587.1| ZK899.1 [Caenorhabditis elegans] 9.0E-71
blast CAE69818 Hypothetical protein CBG16135 [Caenorhabditis briggsae] 2.0E-60
blast CAE69818 Hypothetical protein CBG16135 [Caenorhabditis briggsae] 1.0E-59
Sequence
Target Sequence 
>C. ELEGANS:178393_AT
atgataagccgagcacttcgactgcctcagcaagacctccgacttcaaaacacgcaagtg
tcacaaatttagaacgatctaaatcatcgacatcgcttttcaaacgggccattagtcttc
aatttctcgcgagaaaaacggatagcttagtggacagagagaaagcggcgtatatcaaaa
tgcgatataaggatactgcaaaatatgtcatctggccaatatgcagacttccggataaaa
tagagcatccaaaacatgctccgctagtcccgactccgcacgatcctcgagcagttctca
tggagcctgatctggaagatcacaagtctccatacatgccagccaccataaaccacgttt
tacgatcggattccgaagactcgagtgatgcggaacaagtgctcgagatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATAAGCCGAGCACTTCGACTGC 35 45 29 Antisense
ACCTCCGACTTCAAAACACGCAAGT 164 89 63 Antisense
TCATCGACATCGCTTTTCAAACGGG 168 619 112 Antisense
AACGGGCCATTAGTCTTCAATTTCT 572 143 131 Antisense
CTGGCCAATATGCAGACTTCCGGAT 620 239 240 Antisense
GCATCCAAAACATGCTCCGCTAGTC 121 309 273 Antisense
GATCCTCGAGCAGTTCTCATGGAGC 640 415 310 Antisense
AGATCACAAGTCTCCATACATGCCA 208 67 345 Antisense
CAGCCACCATAAACCACGTTTTACG 47 203 368 Antisense
GATCGGATTCCGAAGACTCGAGTGA 405 417 392 Antisense
GATGCGGAACAAGTGCTCGAGATGA 145 415 415 Antisense
Sequence Source Affymetrix Proprietary Database