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[178392_s_at] --- /// --- /// --- /// ---

Description K02B7.2 /REP_DB=WormBase Gene ID /WP=CE16204 /TR=O45636 /GB=CAB05539.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 99      6grp_total > 94      4grp_total > 04      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 89.5
(-2.2)
A 		81.9
(-3)
A 		102.9
(-0.7)
M 		137
(3)
P 		55
B 51.5
(-3)
P 		73.5
(1.9)
A 		59.3
(-1.3)
A 		78.5
(3)
P 		27
C 99.3
(-0.2)
P 		52.2
(-2.3)
A 		35.4
(-3)
A 		171.4
(3)
P 		136
avr 80.1
(-1.6) 		69.2
(-2.7) 		65.9
(-3) 		129
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 71.3
(-1.5)
A 		48.3
(-3)
A 		105.3
(0.6)
P 		92
(-0.2)
P 		143
(3)
P 		111.9
(1)
P 		95
B 58
(-3)
A 		70.8
(-1.9)
P 		82.7
(-0.9)
P 		88.6
(-0.4)
P 		129.5
(3)
P 		123.8
(2.5)
P 		72
C 79.3
(0.2)
P 		95.8
(1.5)
P 		39
(-3)
A 		67
(-0.8)
A 		114.2
(3)
P 		93.1
(1.3)
P 		75
avr 69.5
(-3) 		71.6
(-2.8) 		75.7
(-2.4) 		82.5
(-1.7) 		128.9
(3) 		109.6
(1.1) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 32.6
(3)
A 		17.8
(-3)
A 		26.9
(0.7)
M 		20
(-2.1)
P 		15
B 16.4
(0.6)
P 		18.2
(3)
A 		13.7
(-3)
A 		16.7
(1)
P 		5
C 32.9
(3)
P 		15
(-2.2)
A 		12.3
(-3)
A 		28.9
(1.8)
P 		21
avr 27.3
(3) 		17
(-3) 		17.6
(-2.7) 		21.9
(-0.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 13.1
(-3)
A 		17.2
(-2.2)
A 		22.9
(-1)
P 		23.3
(-1)
P 		43.1
(3)
P 		27.2
(-0.2)
P 		30
B 20.2
(-3)
A 		23.6
(-2.4)
P 		20.1
(-3)
P 		23.5
(-2.4)
P 		52.6
(3)
P 		46.2
(1.8)
P 		33
C 29.4
(1.3)
P 		29.2
(1.3)
P 		9.9
(-3)
A 		13.5
(-2.2)
A 		37
(3)
P 		31.2
(1.7)
P 		27
avr 20.9
(-2.3) 		23.3
(-1.7) 		17.6
(-3) 		20.1
(-2.4) 		44.2
(3) 		34.9
(0.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178392_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3992
Sequence Type Exemplar sequence
Representative Public ID K02B7.2 NCBI
Target Description K02B7.2 /REP_DB=WormBase Gene ID /WP=CE16204 /TR=O45636 /GB=CAB05539.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070920(11), NM_064649(11), NM_061507(11), NM_071521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070920 NCBI Caenorhabditis elegans R09E12.5 (R09E12.5) mRNA, complete cds. 11/11 A 
NM_064649 NCBI Caenorhabditis elegans K02B7.2 (K02B7.2) mRNA, complete cds. 11/11 None
NM_061507 NCBI Caenorhabditis elegans K02E7.2 (K02E7.2) mRNA, complete cds. 11/11 A 
NM_071521 NCBI Caenorhabditis elegans C17B7.7 (C17B7.7) mRNA, complete cds. 11/11 A 
SNAP00000001043 ENSEMBL cdna:SNAP chromosome:CEL140:II:14691256:14693024:1 11/11 None
GENEFINDER00000001045 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14691014:14693024:1 11/11 None
SNAP00000023031 ENSEMBL cdna:SNAP chromosome:CEL140:II:1079573:1083926:1 9/11 None
GENEFINDER00000023037 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1079331:1081332:1 11/11 None
SNAP00000014999 ENSEMBL cdna:SNAP chromosome:CEL140:IV:705443:707211:1 11/11 None
GENEFINDER00000015018 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:705201:707211:1 11/11 None
SNAP00000041679 ENSEMBL cdna:SNAP chromosome:CEL140:IV:511223:512991:1 11/11 None
GENEFINDER00000041687 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:510981:512991:1 11/11 None
SNAP00000015611 ENSEMBL cdna:SNAP chromosome:CEL140:V:769153:770912:1 11/11 None
GENEFINDER00000015617 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:768911:770912:1 11/11 None
SNAP00000020305 ENSEMBL cdna:SNAP chromosome:CEL140:V:3328482:3330250:1 11/11 None
GENEFINDER00000020320 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3328240:3330250:1 11/11 None
K02E7.2 ENSEMBL cdna:known chromosome:CEL140:II:1079573:1081332:1 gene:K02E7.2 11/11 A 
K02B7.2 ENSEMBL cdna:known chromosome:CEL140:II:14691014:14693024:1 gene:K02B7.2 11/11 None
R09E12.5 ENSEMBL cdna:known chromosome:CEL140:V:769153:770912:1 gene:R09E12.5 11/11 A 
C17B7.7 ENSEMBL cdna:known chromosome:CEL140:V:3325278:3330250:1 gene:C17B7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title



Ensembl K02E7.2
K02B7.2
R09E12.5
C17B7.7
Entrez Gene 175128 Entrez gene
178765 Entrez gene
186886 Entrez gene
187747 Entrez gene
SwissProt O45152 EMBL-EBI
O45636 EMBL-EBI
O17259 EMBL-EBI
O16257 EMBL-EBI
WormBase CE16855 Wormbase
CE16204 Wormbase
CE11624 Wormbase
CE12650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24173 Hypothetical protein R09E12.5 [Caenorhabditis elegans] ref|NP_503321.1| R09E12.5 [Caenorhabditis elegans] 0.0
blast AAB71024 Hypothetical protein K02E7.2 [Caenorhabditis elegans] ref|NP_493908.1| K02E7.2 [Caenorhabditis elegans] 0.0
blast AAC04401 Hypothetical protein C17B7.7 [Caenorhabditis elegans] ref|NP_503922.1| C17B7.7 [Caenorhabditis elegans] 0.0
blast CAB05539 Hypothetical protein K02B7.2 [Caenorhabditis elegans] ref|NP_497050.1| K02B7.2 [Caenorhabditis elegans] 0.0
blast ABA03108 Hypothetical protein Y55F3C.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.5E-10
Sequence
Target Sequence 
>C. ELEGANS:178392_S_AT
attgacgagttgatccgcactgctccggatgcttggtctaaagcttcaatgggtgcaatt
cgaggtgttatgctcatgcaggaactggttactgagcgatcaatgcacccgaaaagtaaa
ccaatggagaagaatcgtttacttctgattccgagagagcaacaaggatccttcacgaca
agcaaaaagacggagcctcttactttcttcccaggagacttgacaaattggccagccgct
cttctcgctgcggcaatcaagttggacaacgaccaggtggacgttactcgccttccaagt
gtggtcaatatgctgttcaagcatcatatcaaagtcagattcgatcatgcccgtggtttg
tatcgaacaaaacacgacggccagaatccaccaaaaattgtgctgccaaagcgtcccatc
atcgattgcacacaattctacaagagcagcgaggatatcgatgaggagcaagttccatca
acttcgaactttcaatcatcttcgaactctctatcaacttcgaaatctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGACGAGTTGATCCGCACTGCTC 390 5 628 Antisense
CTGCTCCGGATGCTTGGTCTAAAGC 606 237 647 Antisense
AGCTTCAATGGGTGCAATTCGAGGT 710 67 669 Antisense
GAGGTGTTATGCTCATGCAGGAACT 169 403 689 Antisense
AGGAACTGGTTACTGAGCGATCAAT 470 55 707 Antisense
GAGCGATCAATGCACCCGAAAAGTA 106 385 721 Antisense
GGATCCTTCACGACAAGCAAAAAGA 243 513 793 Antisense
GCAAAAAGACGGAGCCTCTTACTTT 376 313 809 Antisense
TTGACAAATTGGCCAGCCGCTCTTC 439 705 847 Antisense
ATCTTCGAACTCTCTATCAACTTCG 473 31 1125 Antisense
CTCTCTATCAACTTCGAAATCTGCT 213 231 1134 Antisense
Sequence Source Affymetrix Proprietary Database