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[178389_at]

Description F45E6.1 /REP_DB=WormBase Gene ID /WP=CE03336 /TR=Q20434 /GB=CAA92177.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 18.3
(-3)
P 		26.9
(-2.3)
A 		24
(-2.5)
A 		89.5
(3)
A 		71
B 20.6
(-1.3)
A 		35.8
(1.1)
A 		9.8
(-3)
A 		48.2
(3)
A 		38
C 11.8
(-3)
A 		19.6
(-1.6)
A 		19.1
(-1.7)
A 		46.3
(3)
A 		35
avr 16.9
(-3) 		27.4
(-1.6) 		17.6
(-2.9) 		61.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 15.3
(-1.8)
A 		18.8
(-1.3)
A 		27.2
(-0)
A 		7.5
(-3)
A 		32.6
(0.8)
A 		47.1
(3)
P 		40
B 28.6
(1.1)
M 		12.7
(-1.3)
A 		41.4
(3)
A 		1.7
(-3)
A 		2.6
(-2.9)
A 		21.4
(-0)
A 		40
C 23.6
(1.6)
A 		24.3
(1.8)
A 		28.5
(2.7)
A 		29.7
(3)
A 		3.3
(-3)
A 		11.1
(-1.2)
A 		26
avr 22.5
(-0) 		18.6
(-1.2) 		32.4
(3) 		13
(-2.9) 		12.8
(-3) 		26.5
(1.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.6
(-2.3)
P 		5.8
(-3)
A 		6.3
(-2.6)
A 		13.1
(3)
A 		7
B 6.6
(0.2)
A 		8.9
(2)
A 		2.3
(-3)
A 		10.3
(3)
A 		8
C 3.9
(-3)
A 		5.6
(-0.4)
A 		6.7
(1.3)
A 		7.8
(3)
A 		4
avr 5.7
(-2.3) 		6.8
(-1.1) 		5.1
(-3) 		10.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.8
(-2.4)
A 		6.7
(0)
A 		5.9
(-0.5)
A 		1.9
(-3)
A 		9.8
(1.9)
A 		11.5
(3)
P 		10
B 10
(2.9)
M 		4.2
(-0.6)
A 		10.1
(3)
A 		0.4
(-3)
A 		1.1
(-2.6)
A 		8
(1.7)
A 		10
C 8.8
(3)
A 		7.4
(1.9)
A 		7.3
(1.8)
A 		6
(0.8)
A 		1.1
(-3)
A 		3.7
(-1)
A 		8
avr 7.2
(2.3) 		6.1
(1) 		7.8
(3) 		2.8
(-3) 		4
(-1.6) 		7.7
(2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17281
Sequence Type Exemplar sequence
Representative Public ID F45E6.1 NCBI
Target Description F45E6.1 /REP_DB=WormBase Gene ID /WP=CE03336 /TR=Q20434 /GB=CAA92177.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077692(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077692 NCBI Caenorhabditis elegans F45E6.1 (F45E6.1) mRNA, complete cds. 10/11 None
GENEFINDER00000017833 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12475580:12477362:-1 10/11 None
F45E6.1 ENSEMBL cdna:known chromosome:CEL140:X:12476462:12477493:-1 gene:F45E6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017821 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12476461-12477493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45E6.1
Entrez Gene 185799 Entrez gene
SwissProt Q20434 EMBL-EBI
WormBase CE38188 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92177 Hypothetical protein F45E6.1 [Caenorhabditis elegans] ref|NP_510093.2| F45E6.1 [Caenorhabditis elegans] 1.0E-157
blast CAA92177 Hypothetical protein F45E6.1 [Caenorhabditis elegans] ref|NP_510093.2| F45E6.1 [Caenorhabditis elegans] 1.0E-106
blast CAE57241 Hypothetical protein CBG00119 [Caenorhabditis briggsae] 9.0E-48
blast CAE57241 Hypothetical protein CBG00119 [Caenorhabditis briggsae] 4.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510093.2 7 15-37,57-79,94-116,136-155,165-187,199-221,236-258
F45E6.1 6 50-69,90-112,127-149,169-188,198-220,233-255
GENEFINDER00000017833 7 15-37,57-79,94-116,136-155,165-187,199-221,236-258
Sequence
Target Sequence 
>C. ELEGANS:178389_AT
agctctgttcacattgttggatcgtttatagttttgatgatacttttgataataagagta
accgacgggttcactggaaaatctgaatggattcgttttttatacaagctgttcacaaat
ttactaattcatggatctctaattgttgcaacaatattttactaccttatcttcatttcc
tccatgcaaagattcatgcttcttactattgaaaaactcggaagaaagctgatgacggga
gccagattgacattcaacatgacaatgttgtactttgttgcaatcatttctgcaattaac
aaaatatttgcttcaaacaagattccatggcttgagatgatcacgatggttttgtctctt
attatgcttttgctgagcatcataataatacgccacatcgataaaagatccagatcgggg
atgtctgcgcacgttactgtattgctgcaaacagtgccaattgctattttactaatggtc
agttttttagtcttaccgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCTGTTCACATTGTTGGATCGT 705 79 283 Antisense
GATTCGTTTTTTATACAAGCTGTTC 458 427 372 Antisense
TATTTTACTACCTTATCTTCATTTC 190 663 437 Antisense
CTTCATTTCCTCCATGCAAAGATTC 268 221 453 Antisense
GACGGGAGCCAGATTGACATTCAAC 701 375 516 Antisense
GATGATCACGATGGTTTTGTCTCTT 288 411 618 Antisense
TTTGTCTCTTATTATGCTTTTGCTG 536 667 633 Antisense
GAGCATCATAATAATACGCCACATC 155 389 657 Antisense
GATCCAGATCGGGGATGTCTGCGCA 549 415 689 Antisense
GTCTGCGCACGTTACTGTATTGCTG 494 471 705 Antisense
GTCAGTTTTTTAGTCTTACCGAGCA 348 467 760 Antisense
Sequence Source Affymetrix Proprietary Database