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[178388_at]

Description B0379.5 /REP_DB=WormBase Gene ID /WP=CE07728 /TR=O02205 /GB=CAB05893.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 44      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 55.1
(3)
A 		49.3
(1.7)
A 		37.4
(-1.1)
A 		28.9
(-3)
A 		26
B 30.8
(2.7)
A 		32.1
(3)
A 		5.1
(-3)
A 		23.2
(1)
A 		27
C 31.4
(-0.9)
A 		55.3
(3)
A 		41.5
(0.7)
A 		18.7
(-3)
A 		37
avr 39.1
(1.2) 		45.6
(3) 		28
(-1.8) 		23.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 14.8
(-1)
A 		23.3
(0.4)
A 		36.7
(2.5)
P 		2.2
(-3)
A 		39.6
(3)
A 		18.5
(-0.4)
A 		37
B 11.7
(-3)
A 		33.1
(1.6)
A 		29.7
(0.9)
A 		39.5
(3)
A 		23.3
(-0.5)
A 		20.6
(-1.1)
A 		28
C 4.2
(-3)
A 		45.2
(0.6)
A 		72.1
(3)
A 		69.2
(2.7)
P 		4.7
(-3)
A 		13.5
(-2.2)
A 		68
avr 10.2
(-3) 		33.9
(1) 		46.2
(3) 		37
(1.5) 		22.5
(-1) 		17.5
(-1.8) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20
(3)
A 		10.7
(-0.5)
A 		9.8
(-0.9)
A 		4.2
(-3)
A 		16
B 9.8
(3)
A 		7.9
(1.7)
A 		1.2
(-3)
A 		4.9
(-0.4)
A 		9
C 10.4
(0.4)
A 		15.9
(3)
A 		14.5
(2.3)
A 		3.2
(-3)
A 		13
avr 13.4
(3) 		11.5
(1.8) 		8.5
(-0.2) 		4.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.7
(-1.9)
A 		8.3
(1.1)
A 		8
(0.9)
P 		0.6
(-3)
A 		11.9
(3)
A 		4.5
(-0.9)
A 		11
B 4.1
(-3)
A 		11
(3)
A 		7.2
(-0.3)
A 		10.5
(2.6)
A 		9.5
(1.7)
A 		7.7
(0.1)
A 		7
C 1.6
(-3)
A 		13.8
(1.4)
A 		18.4
(3)
A 		13.9
(1.4)
P 		1.5
(-3)
A 		4.5
(-1.9)
A 		17
avr 2.8
(-3) 		11
(2.9) 		11.2
(3) 		8.3
(0.9) 		7.6
(0.4) 		5.6
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1942
Sequence Type Exemplar sequence
Representative Public ID B0379.5 NCBI
Target Description B0379.5 /REP_DB=WormBase Gene ID /WP=CE07728 /TR=O02205 /GB=CAB05893.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170918
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170918 NCBI Caenorhabditis elegans B0379.4b (B0379.4) mRNA, complete cds. A 
B0379.4b ENSEMBL cdna:known chromosome:CEL140:I:10094654:10102600:-1 gene:B0379.4 A 
GENEFINDER00000021516 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10094654:10102543:-1 None
SNAP00000021511 ENSEMBL cdna:SNAP chromosome:CEL140:I:10100957:10102924:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170917 2/11 Cross Hyb Matching Probes A 
B0379.4a 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10099258-10102474(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0379.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30429 Hypothetical protein B0379.4b [Caenorhabditis elegans] ref|NP_740912.2| B0379.4b [Caenorhabditis elegans] 0.0
blast CAE60287 Hypothetical protein CBG03870 [Caenorhabditis briggsae] 0.0
blast CAD30428 Hypothetical protein B0379.4a [Caenorhabditis elegans] ref|NP_740911.2| B0379.4a [Caenorhabditis elegans] 1.0E-169
blast CAD30429 Hypothetical protein B0379.4b [Caenorhabditis elegans] ref|NP_740912.2| B0379.4b [Caenorhabditis elegans] 2.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR004274 EMBL-EBI NLI interacting factor 9.4E-92
Sequence
Target Sequence 
>C. ELEGANS:178388_AT
aacgcggctatcaaacttgtcgatagacagcaaaacagaatctgtccttgtcaaatcatc
gatgtcaaaattgacaactttgaaacaaagaatattattttcccagacattttcttcctc
gctgctcatcagaaaatatcatcattttctttcttatctcgaatttcaacgaaaaaagat
gatcagaacccccgcacagttggattttcggatcctttcgaaacatctggtgccactcga
ttcctggcacaacgcctttcacaaagaactatgatttatgaacatgaacttttttttaaa
gttttaaaagatacaatcaagccaacgaacgaacagtacaaacaacaatcatcagaatgg
aagaccatctacaccaacaaatacaggaccacccattcagcttatcacacaggtacattg
gtttcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCGGCTATCAAACTTGTCGATA 671 145 760 Antisense
ACAGAATCTGTCCTTGTCAAATCAT 23 109 794 Antisense
TTATTTTCCCAGACATTTTCTTCCT 382 679 854 Antisense
TCTTCCTCGCTGCTCATCAGAAAAT 79 619 872 Antisense
ATCATCATTTTCTTTCTTATCTCGA 138 31 897 Antisense
CGGATCCTTTCGAAACATCTGGTGC 305 241 968 Antisense
TCTGGTGCCACTCGATTCCTGGCAC 513 607 985 Antisense
TTCCTGGCACAACGCCTTTCACAAA 289 699 1000 Antisense
ACCAACAAATACAGGACCACCCATT 33 85 1132 Antisense
CACCCATTCAGCTTATCACACAGGT 653 199 1149 Antisense
TCACACAGGTACATTGGTTTCTTCT 57 629 1164 Antisense
Sequence Source Affymetrix Proprietary Database