[Home] | [Total List]

[178387_at]

Description C35C5.6 /REP_DB=WormBase Gene ID /WP=CE03069 /TR=Q93330 /GB=CAB01686.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 46      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 229.1
(3)
P 		126.7
(-3)
A 		194.6
(1)
A 		180.6
(0.2)
P 		102
B 183.2
(0.7)
P 		209.1
(3)
A 		140.2
(-3)
A 		162.3
(-1.1)
P 		69
C 191
(0.1)
P 		209
(3)
A 		183.1
(-1.2)
P 		171.9
(-3)
A 		37
avr 201.1
(3) 		181.6
(-1) 		172.6
(-2.8) 		171.6
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 330
(3)
A 		234.4
(0.1)
P 		131.5
(-3)
A 		150.1
(-2.4)
A 		199.5
(-0.9)
A 		211.5
(-0.6)
M 		199
B 322.9
(3)
P 		213.8
(-0.2)
P 		121.4
(-3)
A 		184.6
(-1.1)
A 		214.4
(-0.2)
P 		137.8
(-2.5)
P 		202
C 291.7
(3)
P 		196.2
(-0.9)
A 		214.5
(-0.1)
A 		153.9
(-2.6)
A 		208.6
(-0.4)
P 		144
(-3)
P 		148
avr 314.9
(3) 		214.8
(-0.8) 		155.8
(-3) 		162.9
(-2.7) 		207.5
(-1.1) 		164.4
(-2.7) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 83.4
(3)
P 		27.5
(-2.9)
A 		50.9
(-0.4)
A 		26.4
(-3)
P 		57
B 58.4
(3)
P 		51.7
(1.4)
A 		32.5
(-3)
A 		34.6
(-2.5)
P 		26
C 63.2
(2.9)
P 		60.1
(2.4)
A 		63.8
(3)
P 		29
(-3)
A 		35
avr 68.3
(3) 		46.4
(-0.4) 		49.1
(-0) 		30
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 60.8
(0.5)
A 		83.4
(3)
P 		28.6
(-3)
A 		38.1
(-2)
A 		60.2
(0.5)
A 		51.5
(-0.5)
M 		55
B 112.4
(3)
P 		71.2
(0)
P 		29.5
(-3)
A 		48.9
(-1.6)
A 		87.1
(1.2)
P 		51.4
(-1.4)
P 		83
C 108.1
(3)
P 		59.9
(-0.8)
A 		54.6
(-1.2)
A 		31
(-3)
A 		67.5
(-0.2)
P 		48.2
(-1.7)
P 		77
avr 93.8
(3) 		71.5
(0.6) 		37.6
(-3) 		39.3
(-2.8) 		71.6
(0.6) 		50.4
(-1.6) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17285
Sequence Type Exemplar sequence
Representative Public ID C35C5.6 NCBI
Target Description C35C5.6 /REP_DB=WormBase Gene ID /WP=CE03069 /TR=Q93330 /GB=CAB01686.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077532 NCBI Caenorhabditis elegans C35C5.6 (C35C5.6) mRNA, complete cds. 11/11 None
SNAP00000005112 ENSEMBL cdna:SNAP chromosome:CEL140:X:11563909:11569233:1 11/11 None
GENEFINDER00000005117 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11563909:11569233:1 11/11 None
C35C5.6 ENSEMBL cdna:known chromosome:CEL140:X:11563909:11569611:1 gene:C35C5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11563908-11569233(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35C5.6
Entrez Gene 181345 Entrez gene
SwissProt Q93330 EMBL-EBI
WormBase CE03069 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629579_AT dm
DROSGENOME1:152774_AT dm
CHICKEN:GGAAFFX.10344.1.S1_AT similar to T1 protein gga
CHICKEN:GGAAFFX.10344.2.S1_AT similar to T1 protein gga
CHICKEN:GGAAFFX.10344.2.S1_S_AT similar to T1 protein gga
CHICKEN:GGAAFFX.10344.3.S1_AT similar to T1 protein gga
Protein Similarities
Method ID Description E-Value
blast CAB01686 Hypothetical protein C35C5.6 [Caenorhabditis elegans] ref|NP_509933.1| C35C5.6 [Caenorhabditis elegans] 0.0
blast CAE70614 Hypothetical protein CBG17297 [Caenorhabditis briggsae] 0.0
blast CAE70616 Hypothetical protein CBG17299 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178387_AT
gacgttactggtggagcttttcatcaggcgaaacaacgtggaagtcacatgatgcagaaa
atggaaactgaaagactgcggttgattctggaaaaccatgtctcgaagcatttagatatt
cgttggtctattccagctctcaatcttgatggacaagtacctgttggctcccttctttct
tcagtgtcacttctaaaacaactcgtgctaccagccattagccttgatttctttgttaac
gggaaacagtacgtaagcgaggacgatgtcacagttggaattggtcaatttgtcaccgtt
gaagtatccatcatttcttcgttagccgccgaatacaatggaattctatcgttggaatgt
gagcaagagatttcacatcttctcggttccaatgatacgagcagctttatgttagttacc
ggtgcgaagaagattcctttcacagtcgacaaagagaacaaacaatcggcaacattcaac
ttggcctttattgtcgaaggaagtttccgtgtccgcccacaaatcactccggctcccggt
caaaatgctcttctcgccgaggacatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTACTGGTGGAGCTTTTCATC 648 377 3079 Antisense
GATATTCGTTGGTCTATTCCAGCTC 473 427 3193 Antisense
TCTATTCCAGCTCTCAATCTTGATG 153 615 3205 Antisense
TCTAAAACAACTCGTGCTACCAGCC 510 607 3270 Antisense
TACCAGCCATTAGCCTTGATTTCTT 290 651 3287 Antisense
GGAATTGGTCAATTTGTCACCGTTG 686 533 3355 Antisense
TCATTTCTTCGTTAGCCGCCGAATA 18 619 3389 Antisense
TCACATCTTCTCGGTTCCAATGATA 118 629 3451 Antisense
GAGCAGCTTTATGTTAGTTACCGGT 278 367 3477 Antisense
ATCGGCAACATTCAACTTGGCCTTT 338 35 3543 Antisense
AATGCTCTTCTCGCCGAGGACATGT 640 165 3622 Antisense
Sequence Source Affymetrix Proprietary Database