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[178386_s_at]

Description C47E8.4 /REP_DB=WormBase Gene ID /WP=CE05440 /TR=Q18691 /GB=CAA99795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 936
1 2 3 4 range
A 790.7
(-2)
P 		682.5
(-2.9)
P 		672.2
(-3)
P 		1381.6
(3)
P 		709
B 633.3
(-3)
P 		750.7
(-2.2)
P 		641.8
(-2.9)
P 		1568.9
(3)
P 		936
C 812.4
(-2)
P 		707.5
(-2.8)
P 		683.7
(-3)
P 		1427.8
(3)
P 		744
avr 745.5
(-2.4) 		713.6
(-2.6) 		665.9
(-3) 		1459.4
(3) 		794

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1239
1 2 3 4 5 6 range
A 600
(-3)
P 		718.5
(-2.1)
P 		713.7
(-2.1)
P 		675.4
(-2.4)
P 		885.4
(-0.9)
P 		1398.7
(3)
P 		799
B 527.3
(-3)
P 		687.2
(-2.2)
P 		868.7
(-1.3)
P 		769.2
(-1.8)
P 		964.7
(-0.8)
P 		1741.9
(3)
P 		1215
C 502.8
(-3)
P 		769.3
(-1.5)
P 		824.7
(-1.2)
P 		848.7
(-1.1)
P 		850.5
(-1.1)
P 		1585.4
(3)
P 		1083
avr 543.4
(-3) 		725
(-1.9) 		802.4
(-1.5) 		764.4
(-1.7) 		900.2
(-0.9) 		1575.3
(3) 		1032
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 287.9
(3)
P 		148.2
(-3)
P 		175.7
(-1.8)
P 		202.2
(-0.7)
P 		140
B 201.9
(-1.3)
P 		185.4
(-1.8)
P 		148.7
(-3)
P 		334.3
(3)
P 		186
C 268.9
(3)
P 		203.4
(-3)
P 		238.3
(0.2)
P 		240.8
(0.4)
P 		66
avr 252.9
(2.5) 		179
(-3) 		187.6
(-2.4) 		259.1
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 110.6
(-3)
P 		255.5
(0.8)
P 		155.4
(-1.8)
P 		171.3
(-1.4)
P 		267.2
(1.1)
P 		340.5
(3)
P 		230
B 183.5
(-3)
P 		228.7
(-2.4)
P 		211
(-2.6)
P 		203.7
(-2.7)
P 		391.9
(-0.3)
P 		649.5
(3)
P 		466
C 186.4
(-2.7)
P 		234.7
(-1.9)
P 		209.9
(-2.3)
P 		170.7
(-3)
P 		275.2
(-1.3)
P 		530.7
(3)
P 		360
avr 160.2
(-3) 		239.6
(-1.6) 		192.1
(-2.4) 		181.9
(-2.6) 		311.4
(-0.4) 		506.9
(3) 		347
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178386_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14168
Sequence Type Exemplar sequence
Representative Public ID C47E8.4 NCBI
Target Description C47E8.4 /REP_DB=WormBase Gene ID /WP=CE05440 /TR=Q18691 /GB=CAA99795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074224 NCBI Caenorhabditis elegans C47E8.4 (C47E8.4) mRNA, complete cds. 11/11 None
SNAP00000005834 ENSEMBL cdna:SNAP chromosome:CEL140:V:14686413:14688066:-1 11/11 None
GENEFINDER00000005850 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14686413:14688066:-1 11/11 None
C47E8.4 ENSEMBL cdna:known chromosome:CEL140:V:14686359:14688141:-1 gene:C47E8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14686412-14688141(-) 95.09 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E8.4
Entrez Gene 179970 Entrez gene
SwissProt Q18691 EMBL-EBI
WormBase CE35838 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264015_AT XAP5 family protein at
DROSOPHILA_2:1625720_AT dm
DROSGENOME1:142707_AT dm
HG-U133_PLUS_2:203262_S_AT family with sequence similarity 50, member A hs
HG-U133A_2:203262_S_AT family with sequence similarity 50, member A hs
HG-U133A:203262_S_AT family with sequence similarity 50, member A hs
HG-FOCUS:203262_S_AT family with sequence similarity 50, member A hs
HU35KSUBD:RC_D51182_S_AT family with sequence similarity 50, member A hs
HUGENEFL:D83260_S_AT family with sequence similarity 50, member A hs
U133_X3P:G4758219_3P_S_AT family with sequence similarity 50, member A hs
HG-U95AV2:38599_S_AT family with sequence similarity 50, member A hs
HG-U95D:87975_AT family with sequence similarity 50, member A hs
MOUSE430_2:1419516_AT DNA segment, human DXS9928E mm
MOE430A:1419516_AT DNA segment, human DXS9928E mm
MOUSE430A_2:1419516_AT DNA segment, human DXS9928E mm
MU11KSUBB:W33799_AT DNA segment, human DXS9928E mm
MG-U74AV2:92649_AT DNA segment, human DXS9928E mm
RAE230B:1380102_AT similar to XAP-5 protein rn
RAT230_2:1380102_AT similar to XAP-5 protein rn
Protein Similarities
Method ID Description E-Value
blast CAA99795 Hypothetical protein C47E8.4 [Caenorhabditis elegans] ref|NP_506625.2| C47E8.4 [Caenorhabditis elegans] 1.0E-179
blast CAA99795 Hypothetical protein C47E8.4 [Caenorhabditis elegans] ref|NP_506625.2| C47E8.4 [Caenorhabditis elegans] 1.0E-165
blast CAE60852 Hypothetical protein CBG04561 [Caenorhabditis briggsae] 1.0E-157
blast XP_683265 PREDICTED: similar to XAP-5 protein isoform 1 [Danio rerio] 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR007005 EMBL-EBI XAP5 protein 1.0E-126
Pfam IPR007005 EMBL-EBI XAP5 protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178386_S_AT
gaatcattggcagccgagtggcgtgtgaagcaagatgccgagaaaaacgaggaaattaca
gttgcctacgcctattgggatggatcttcacatcggaaaaatatgaaaatcaagaaagga
aacacgatttcgcaatgtctaggaagagccattgagaaggcaatttatgaaattcgaccg
tttcgggcaaaaacccacaaactttacttcccctctaaaatattttttaattgttttttt
ttttcaacaaatcaaaaaatatttataaatattcattttcaggctctgaaaaaggaattc
acggagcttaaatcgtgcacagccgagaatctgatgttcgtcaaagaggatctcatcata
ccacatttctacacgttccaagactttatagtcacaaaagcaatgggaaagactggtccg
ctgttcgtgttcgattcggcttccgatgttcgtatacgccaagatgctgcacttgactat
ggagaatctcatccagcgaaaatagtacttcgtagttggtacgaaaagaataagcacatt
tatccggcgtcacgatgggaaccattcgtgcccagcaagaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATTGGCAGCCGAGTGGCGTG 448 327 577 Antisense
TACAGTTGCCTACGCCTATTGGGAT 36 645 633 Antisense
GGAGCTTAAATCGTGCACAGCCGAG 411 521 879 Antisense
ATCATACCACATTTCTACACGTTCC 196 31 931 Antisense
TGGGAAAGACTGGTCCGCTGTTCGT 632 551 980 Antisense
GTTCGATTCGGCTTCCGATGTTCGT 128 441 1005 Antisense
GTTCGTATACGCCAAGATGCTGCAC 689 441 1024 Antisense
AGATGCTGCACTTGACTATGGAGAA 392 67 1038 Antisense
AATAAGCACATTTATCCGGCGTCAC 609 171 1105 Antisense
ATCCGGCGTCACGATGGGAACCATT 86 39 1118 Antisense
GAACCATTCGTGCCCAGCAAGAAAT 99 331 1135 Antisense
Sequence Source Affymetrix Proprietary Database