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[178385_at]

Description C35C5.2 /REP_DB=WormBase Gene ID /WP=CE08584 /TR=Q93332 /GB=CAB01688.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 80.3
(-1.1)
P 		107.7
(1.1)
A 		55.9
(-3)
A 		132.6
(3)
A 		77
B 102.5
(3)
P 		65.6
(-1.3)
A 		50.7
(-3)
A 		73.4
(-0.4)
A 		52
C 89.3
(0.7)
P 		51.6
(-3)
A 		70.1
(-1.2)
A 		112.2
(3)
A 		61
avr 90.7
(1) 		75
(-1) 		58.9
(-3) 		106.1
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 86.1
(2.8)
A 		57
(-0.9)
A 		87.5
(3)
P 		41.1
(-3)
A 		82.4
(2.3)
P 		78
(1.8)
A 		46
B 73.3
(3)
A 		67.9
(2.1)
P 		69.9
(2.4)
A 		57.3
(0.3)
A 		37.5
(-3)
A 		56
(0.1)
A 		36
C 31.5
(-3)
A 		71.5
(1.9)
P 		64.6
(1.1)
A 		48
(-1)
A 		80
(3)
A 		72.2
(2)
M 		49
avr 63.6
(0.5) 		65.5
(1) 		74
(3) 		48.8
(-3) 		66.6
(1.2) 		68.7
(1.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 29.3
(3)
P 		23.4
(0.6)
A 		14.6
(-3)
A 		19.4
(-1)
A 		15
B 32.7
(3)
P 		16.2
(-1.7)
A 		11.7
(-3)
A 		15.6
(-1.9)
A 		21
C 29.5
(3)
P 		14.8
(-3)
A 		24.4
(0.9)
A 		18.9
(-1.3)
A 		15
avr 30.5
(3) 		18.1
(-2.5) 		16.9
(-3) 		18
(-2.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 15.9
(-0.7)
A 		20.3
(1.1)
A 		19.1
(0.6)
P 		10.4
(-3)
A 		24.9
(3)
P 		19
(0.6)
A 		15
B 25.5
(3)
A 		22.6
(1.3)
P 		17
(-2)
A 		15.2
(-3)
A 		15.3
(-2.9)
A 		20.9
(0.3)
A 		10
C 11.7
(-2.3)
A 		21.8
(1.5)
P 		16.4
(-0.5)
A 		9.7
(-3)
A 		25.9
(3)
A 		24.2
(2.4)
M 		16
avr 17.7
(0.5) 		21.6
(2.8) 		17.5
(0.4) 		11.8
(-3) 		22
(3) 		21.4
(2.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16968
Sequence Type Exemplar sequence
Representative Public ID C35C5.2 NCBI
Target Description C35C5.2 /REP_DB=WormBase Gene ID /WP=CE08584 /TR=Q93332 /GB=CAB01688.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029275 NCBI Caenorhabditis elegans C35C5.11 (C35C5.11) mRNA, complete cds. 11/11 None
GENEFINDER00000005116 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11543685:11544982:1 11/11 None
C35C5.2 ENSEMBL cdna:known chromosome:CEL140:X:11537894:11544982:1 gene:C35C5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005105 2/11 Cross Hyb Matching Probes None
SNAP00000005106 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11537893-11544982(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35C5.2
Entrez Gene 3565896 Entrez gene
SwissProt Q58A98 EMBL-EBI
WormBase CE38152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI70407 Hypothetical protein C35C5.11 [Caenorhabditis elegans] ref|NP_001024446.1| C35C5.11 [Caenorhabditis elegans] 0.0
blast CAB01688 Hypothetical protein C35C5.2 [Caenorhabditis elegans] ref|NP_509928.2| C35C5.2 [Caenorhabditis elegans] 0.0
blast CAE70620 Hypothetical protein CBG17304 [Caenorhabditis briggsae] 0.0
blast CAI70407 Hypothetical protein C35C5.11 [Caenorhabditis elegans] ref|NP_001024446.1| C35C5.11 [Caenorhabditis elegans] 1.0E-141
blast CAE70620 Hypothetical protein CBG17304 [Caenorhabditis briggsae] 1.0E-85
blast CAB01688 Hypothetical protein C35C5.2 [Caenorhabditis elegans] ref|NP_509928.2| C35C5.2 [Caenorhabditis elegans] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR007365 EMBL-EBI Transferrin receptor-like dimerisation domain 6.1E-55
Pfam IPR007365 EMBL-EBI Transferrin receptor-like dimerisation domain 1.1E-53
Pfam IPR007484 EMBL-EBI Peptidase M28 1.9E-111
Pfam IPR007484 EMBL-EBI Peptidase M28 6.7E-28
Pfam IPR007484 EMBL-EBI Peptidase M28 1.0E-23
Pfam IPR003137 EMBL-EBI Protease-associated PA 8.7E-20
Pfam IPR003137 EMBL-EBI Protease-associated PA 4.1E-18
Pfam IPR007365 EMBL-EBI Transferrin receptor-like dimerisation domain 1.1E-53
Pfam IPR007484 EMBL-EBI Peptidase M28 9.0E-54
Pfam IPR007484 EMBL-EBI Peptidase M28 5.7E-8
Pfam IPR003137 EMBL-EBI Protease-associated PA 4.0E-16
Pfam IPR007365 EMBL-EBI Transferrin receptor-like dimerisation domain 8.1E-49
Pfam IPR007484 EMBL-EBI Peptidase M28 4.4E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024446.1 2 7-29,493-515
C35C5.2 1 26-48
GENEFINDER00000005116 2 5-27,119-141
Sequence
Target Sequence 
>C. ELEGANS:178385_AT
ttacttgctatggctaatcctacagttgttaatgttcttcgtgcagctgcagcaaaaatt
tcacatccaaatccgaaaacatttctccctcacaaaacaataattcctcacatccatttt
accagcttccagcaggtggcagtgatcatttgtctttctttaattatttggatgcataaa
gctatgggcgagatgttaattgagtgcattttaaacttttcggaaagcagaattcttcct
tatgacttaaaagagttaatggacagagttcttgatgagtatttcccgagaatacaacaa
cacattaataaggctcagacttttgaaaacatttctgagtacttgactgagccccagaaa
cagtttgaactatttgaaaaatgtttcataaacccgcatggtatccttggagatccgcag
agtcgtcatgtgctcttccgcccgagtgcggacaactggtatcgtggaaacgcaatctct
caagtacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTTGCTATGGCTAATCCTACAG 361 683 3835 Antisense
TGTTAATGTTCTTCGTGCAGCTGCA 412 561 3861 Antisense
AACATTTCTCCCTCACAAAACAATA 456 137 3912 Antisense
AATAATTCCTCACATCCATTTTACC 368 171 3933 Antisense
TTTTACCAGCTTCCAGCAGGTGGCA 111 673 3951 Antisense
GTGGCAGTGATCATTTGTCTTTCTT 473 491 3970 Antisense
GAGTACTTGACTGAGCCCCAGAAAC 53 395 4171 Antisense
AACCCGCATGGTATCCTTGGAGATC 85 147 4225 Antisense
AGATCCGCAGAGTCGTCATGTGCTC 491 67 4245 Antisense
GCCCGAGTGCGGACAACTGGTATCG 614 285 4274 Antisense
GGAAACGCAATCTCTCAAGTACACA 379 527 4300 Antisense
Sequence Source Affymetrix Proprietary Database