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[178384_at]

Description C06B3.2 /REP_DB=WormBase Gene ID /WP=CE07959 /TR=Q17701 /GB=CAB01113.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 34.6
(-2.4)
A 		29.3
(-3)
A 		41.7
(-1.7)
A 		86.4
(3)
A 		57
B 72
(3)
A 		2.6
(-3)
A 		41.7
(0.4)
A 		4.9
(-2.8)
A 		69
C 44.9
(-0.9)
A 		46.8
(-0.8)
A 		10.4
(-3)
A 		110.9
(3)
A 		101
avr 50.5
(0.5) 		26.2
(-3) 		31.3
(-2.3) 		67.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 39.3
(1.4)
A 		7.6
(-3)
A 		50.7
(3)
A 		17.9
(-1.6)
A 		21.5
(-1.1)
A 		9.1
(-2.8)
A 		43
B 41.1
(0.4)
A 		70.9
(3)
A 		8.5
(-2.5)
A 		3.2
(-3)
A 		42
(0.4)
A 		40
(0.3)
A 		68
C 51.7
(2.6)
A 		55.5
(3)
A 		3.7
(-3)
A 		11.4
(-2.1)
A 		24.9
(-0.5)
A 		46.8
(2)
A 		52
avr 44
(2.9) 		44.7
(3) 		21
(-1.2) 		10.8
(-3) 		29.5
(0.3) 		32
(0.8) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.6
(3)
A 		6.4
(-3)
A 		10.9
(1.4)
A 		12.6
(3)
A 		6
B 23
(3)
A 		0.6
(-3)
A 		9.7
(-0.6)
A 		1.1
(-2.9)
A 		22
C 14.9
(1.5)
A 		13.5
(0.9)
A 		3.6
(-3)
A 		18.7
(3)
A 		15
avr 16.8
(3) 		6.8
(-3) 		8.1
(-2.2) 		10.8
(-0.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.3
(0.5)
A 		2.7
(-2.7)
A 		11
(3)
A 		4.5
(-1.4)
A 		6.5
(-0.1)
A 		2.2
(-3)
A 		9
B 14.3
(0.6)
A 		23.6
(3)
A 		2.1
(-2.7)
A 		0.8
(-3)
A 		17.1
(1.3)
A 		14.9
(0.7)
A 		23
C 19.2
(3)
A 		16.9
(2.2)
A 		1
(-3)
A 		2.3
(-2.6)
A 		8.1
(-0.7)
A 		15.7
(1.8)
A 		18
avr 13.6
(2.6) 		14.4
(3) 		4.7
(-1.9) 		2.5
(-3) 		10.6
(1.1) 		10.9
(1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178384_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13130
Sequence Type Exemplar sequence
Representative Public ID C06B3.2 NCBI
Target Description C06B3.2 /REP_DB=WormBase Gene ID /WP=CE07959 /TR=Q17701 /GB=CAB01113.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074045(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074045 NCBI Caenorhabditis elegans C06B3.2 (C06B3.2) mRNA, complete cds. 11/11 None
SNAP00000008240 ENSEMBL cdna:SNAP chromosome:CEL140:V:13902688:13905250:1 9/11 None
GENEFINDER00000008255 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13902102:13905242:1 11/11 None
C06B3.2 ENSEMBL cdna:known chromosome:CEL140:V:13902102:13905114:1 gene:C06B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13902101-13905114(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06B3.2
Entrez Gene 182290 Entrez gene
SwissProt Q17701 EMBL-EBI
WormBase CE07959 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01113 Hypothetical protein C06B3.2 [Caenorhabditis elegans] ref|NP_506446.1| C06B3.2 [Caenorhabditis elegans] 0.0
blast CAE66204 Hypothetical protein CBG11444 [Caenorhabditis briggsae] 0.0
blast CAE61206 Hypothetical protein CBG04996 [Caenorhabditis briggsae] 0.0
blast CAB01113 Hypothetical protein C06B3.2 [Caenorhabditis elegans] ref|NP_506446.1| C06B3.2 [Caenorhabditis elegans] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.2E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506446.1 10 199-221,279-301,316-338,359-381,422-444,449-471,529-548,569-591,601-623,636-658
C06B3.2 10 199-221,279-301,316-338,359-381,422-444,449-471,529-548,569-591,601-623,636-658
SNAP00000008240 6 62-84,135-157,162-184,242-261,282-304,314-336
GENEFINDER00000008255 10 199-221,279-301,316-338,359-381,422-444,449-471,529-548,569-591,601-623,636-658
Sequence
Target Sequence 
>C. ELEGANS:178384_AT
gatatgcccgcagattctttcaatgcagattcatctggaaaattcaacttctatgtctac
caaaaaccgtggacccgatgtcctccatacctggttggtatacttggtggctactttctg
tcccgatttgccacatcgccagttaaactttcgtttgttaaaaaactcattccaatgctt
cttgccgtaggattaatttttgcatgtctcacagctaacattgggtacgatcagggagat
cactggagttcatggaccaaggcaacttattacaatttttctcgattcttctgggcactt
tctgttttgtggatcatactatcgtgtcactatggttgggcaggaccaattggaaatttc
atgagtcatccaatatggcaaccactgggccgtttgtcttattctgcgtatattgttcat
ttgatggtagtctactatttcttgaatgtcggtgataaacctcttcatttcgtttctacg
tggcaagtgtacgtatattacatacttccggcaacaatcctcacatacatctttgcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGCCCGCAGATTCTTTCAATG 541 425 1432 Antisense
GATGTCCTCCATACCTGGTTGGTAT 157 409 1508 Antisense
TATACTTGGTGGCTACTTTCTGTCC 629 659 1530 Antisense
ATTTGCCACATCGCCAGTTAAACTT 646 15 1557 Antisense
TCCAATGCTTCTTGCCGTAGGATTA 462 587 1602 Antisense
TCTTCTGGGCACTTTCTGTTTTGTG 529 617 1718 Antisense
CTATCGTGTCACTATGGTTGGGCAG 541 221 1750 Antisense
AATATGGCAACCACTGGGCCGTTTG 206 171 1803 Antisense
GTCGGTGATAAACCTCTTCATTTCG 256 473 1879 Antisense
TACATACTTCCGGCAACAATCCTCA 536 643 1930 Antisense
AATCCTCACATACATCTTTGCATTC 437 167 1947 Antisense
Sequence Source Affymetrix Proprietary Database