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[178383_at]

Description F13G3.4 /REP_DB=WormBase Gene ID /WP=CE17659 /TR=Q19416 /GB=CAA95796.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 08      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 74      6grp_total > 09      4grp_total > 60      6grp_cgc > 0      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 715.4
(3)
P 		666.2
(2)
P 		628
(1.2)
P 		426.3
(-3)
P 		289
B 654.6
(1.3)
P 		749.7
(2.6)
P 		776
(3)
P 		343.1
(-3)
P 		433
C 704.8
(0.9)
P 		829.3
(2.4)
P 		877.1
(3)
P 		387.8
(-3)
P 		489
avr 691.6
(1.9) 		748.4
(2.8) 		760.4
(3) 		385.7
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 680.4
(1.8)
P 		642.4
(-1.6)
P 		675.8
(1.4)
P 		689.2
(2.6)
P 		626.2
(-3)
P 		694.2
(3)
P 		68
B 658.4
(2.8)
P 		594.6
(-2.1)
P 		612.7
(-0.7)
P 		631.4
(0.8)
P 		660.7
(3)
P 		582.2
(-3)
P 		79
C 854
(3)
P 		627.9
(-3)
P 		650.7
(-2.4)
P 		761.9
(0.6)
P 		707.2
(-0.9)
P 		718.6
(-0.6)
P 		226
avr 730.9
(3) 		621.6
(-3) 		646.4
(-1.6) 		694.2
(1) 		664.7
(-0.6) 		665
(-0.6) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 260.5
(3)
P 		144.6
(-0.5)
P 		164.2
(0.1)
P 		62.4
(-3)
P 		198
B 208.7
(3)
P 		185.2
(2)
P 		179.8
(1.7)
P 		73.1
(-3)
P 		136
C 233.3
(1.2)
P 		238.4
(1.3)
P 		305.7
(3)
P 		65.4
(-3)
P 		240
avr 234.2
(3) 		189.4
(1.4) 		216.6
(2.4) 		67
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 125.4
(-3)
P 		228.5
(3)
P 		147.2
(-1.7)
P 		174.8
(-0.1)
P 		189
(0.7)
P 		169
(-0.5)
P 		103
B 229.1
(1)
P 		197.9
(-0.5)
P 		148.8
(-3)
P 		167.2
(-2.1)
P 		268.4
(3)
P 		217.1
(0.4)
P 		120
C 316.5
(3)
P 		191.6
(-1.6)
P 		165.6
(-2.5)
P 		153.2
(-3)
P 		228.9
(-0.2)
P 		240.6
(0.2)
P 		163
avr 223.7
(2.6) 		206
(1.2) 		153.9
(-3) 		165.1
(-2.1) 		228.8
(3) 		208.9
(1.4) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178383_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1929
Sequence Type Exemplar sequence
Representative Public ID F13G3.4 NCBI
Target Description F13G3.4 /REP_DB=WormBase Gene ID /WP=CE17659 /TR=Q19416 /GB=CAA95796.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059662 NCBI Caenorhabditis elegans DYnein Light chain (Tctex type] family member (dylt-1) (dylt-1) mRNA, complete cds. 11/11 None
SNAP00000006938 ENSEMBL cdna:SNAP chromosome:CEL140:I:7308483:7309025:-1 11/11 None
GENEFINDER00000006951 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7308483:7309025:-1 11/11 None
F13G3.4 ENSEMBL cdna:known chromosome:CEL140:I:7308198:7309044:-1 gene:F13G3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7308413-7308956(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dylt-1
Ensembl F13G3.4
Entrez Gene 172476 Entrez gene
SwissProt Q19416 EMBL-EBI
WormBase CE17659 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA95796 Hypothetical protein F13G3.4 [Caenorhabditis elegans] ref|NP_492063.1| DYnein Light chain (Tctex type] family member (dylt-1) [Caenorhabditis elegans] 7.0E-54
blast CAA95796 Hypothetical protein F13G3.4 [Caenorhabditis elegans] ref|NP_492063.1| DYnein Light chain (Tctex type] family member (dylt-1) [Caenorhabditis elegans] 1.0E-51
blast CAE74213 Hypothetical protein CBG21895 [Caenorhabditis briggsae] 4.0E-51
blast CAE74213 Hypothetical protein CBG21895 [Caenorhabditis briggsae] 6.0E-49
blast XP_767597 hypothetical protein GLP_442_13579_13256 [Giardia lamblia ATCC 50803] gb|EAA37443.1| GLP_442_13579_13256 [Giardia lamblia ATCC 50803] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005334 EMBL-EBI Tctex-1 family 1.6E-53
Pfam IPR005334 EMBL-EBI Tctex-1 family 5.1E-48
Sequence
Target Sequence 
>C. ELEGANS:178383_AT
atggctttggcagaggaggacgttcacatgatcatcaagcaggtactcgacgaggttgta
ggcgcaagcacccagtatacccacaaggacagtgttcagtggaatcagaaggccgtcgaa
caaataacgaagaagctagtggcagcgggaaaaccatacaaatatgtggttacctcgtcg
ttccttcagatctcgagcggttccggtctcaatgttagcacgatttcctactggaataaa
gtcacggattcctcgtacatgtacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTTTGGCAGAGGAGGACGTTC 207 23 13 Antisense
GAGGACGTTCACATGATCATCAAGC 466 403 28 Antisense
TCATCAAGCAGGTACTCGACGAGGT 233 619 44 Antisense
GACGAGGTTGTAGGCGCAAGCACCC 443 377 61 Antisense
CACCCAGTATACCCACAAGGACAGT 97 201 81 Antisense
GTGGAATCAGAAGGCCGTCGAACAA 610 489 111 Antisense
CAAATATGTGGTTACCTCGTCGTTC 430 191 171 Antisense
CTCGTCGTTCCTTCAGATCTCGAGC 104 233 186 Antisense
CGGTTCCGGTCTCAATGTTAGCACG 113 213 210 Antisense
ATGTTAGCACGATTTCCTACTGGAA 686 47 224 Antisense
GTCACGGATTCCTCGTACATGTACC 174 465 253 Antisense
Sequence Source Affymetrix Proprietary Database