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[178382_s_at]

Description F55F3.1 /REP_DB=WormBase Gene ID /WP=CE18744 /TR=Q9XUY2 /GB=CAB04480.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 85      6grp_total > 58      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 796.4
(-1.5)
P 		701.1
(-2.3)
P 		611.9
(-3)
P 		1359.2
(3)
P 		747
B 953.7
(0.1)
P 		604.9
(-3)
P 		620
(-2.9)
P 		1282.1
(3)
P 		677
C 870.3
(-0.4)
P 		662.7
(-2)
P 		533.9
(-3)
P 		1305.1
(3)
P 		771
avr 873.5
(-0.6) 		656.2
(-2.4) 		588.6
(-3) 		1315.5
(3) 		727

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 438
1 2 3 4 5 6 range
A 851.5
(1.1)
P 		661.2
(-2.4)
P 		685.8
(-2)
P 		628.9
(-3)
P 		770.3
(-0.4)
P 		957.4
(3)
P 		329
B 830.1
(0.5)
P 		770.2
(-0.7)
P 		805.2
(-0)
P 		785.4
(-0.4)
P 		652.8
(-3)
P 		960.4
(3)
P 		308
C 878.9
(0.6)
P 		712.6
(-1.7)
P 		703.4
(-1.8)
P 		780.3
(-0.7)
P 		614.6
(-3)
P 		1052.5
(3)
P 		438
avr 853.5
(0.4) 		714.7
(-2.3) 		731.5
(-2) 		731.5
(-2) 		679.2
(-3) 		990.1
(3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 290
(3)
P 		152.2
(-3)
P 		160
(-2.7)
P 		199
(-1)
P 		138
B 304.1
(3)
P 		149.4
(-2.8)
P 		143.7
(-3)
P 		273.2
(1.8)
P 		160
C 288.1
(3)
P 		190.5
(-2.7)
P 		186.1
(-3)
P 		220.1
(-1)
P 		102
avr 294.1
(3) 		164
(-3) 		163.3
(-3) 		230.8
(0.1) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 157
(-2.5)
P 		235.1
(3)
P 		149.4
(-3)
P 		159.5
(-2.3)
P 		232.4
(2.8)
P 		233.1
(2.9)
P 		86
B 288.8
(0.4)
P 		256.4
(-0.8)
P 		195.5
(-3)
P 		208
(-2.5)
P 		265.2
(-0.4)
P 		358.1
(3)
P 		163
C 325.8
(2.2)
P 		217.4
(-1.1)
P 		179
(-2.3)
P 		156.9
(-3)
P 		198.9
(-1.7)
P 		352.3
(3)
P 		195
avr 257.2
(0.5) 		236.3
(-0.4) 		174.6
(-3) 		174.8
(-3) 		232.2
(-0.5) 		314.5
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178382_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17656
Sequence Type Exemplar sequence
Representative Public ID F55F3.1 NCBI
Target Description F55F3.1 /REP_DB=WormBase Gene ID /WP=CE18744 /TR=Q9XUY2 /GB=CAB04480.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077897 NCBI Caenorhabditis elegans F55F3.1 (F55F3.1) mRNA, complete cds. 11/11 None
GENEFINDER00000018558 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13755756:13758643:1 11/11 None
SNAP00000018554 ENSEMBL cdna:SNAP chromosome:CEL140:X:13755780:13758643:1 11/11 None
F55F3.1.2 ENSEMBL cdna:known chromosome:CEL140:X:13755692:13758643:1 gene:F55F3.1 11/11 None
F55F3.1.1 ENSEMBL cdna:known chromosome:CEL140:X:13755693:13759312:1 gene:F55F3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13755755-13758643(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55F3.1
Entrez Gene 181492 Entrez gene
SwissProt Q9XUY2 EMBL-EBI
WormBase CE18744 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13948_AT 5'-AMP-activated protein kinase beta-2 subunit, putative at
ATH1-121501:245260_AT 5'-AMP-activated protein kinase beta-2 subunit, putative at
CANINE_2:CFA.17338.1.S1_AT similar to 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb) cfa
CANINE_2:CFA.17338.1.S1_S_AT similar to 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb) cfa
CANINE_2:CFAAFFX.15678.1.S1_AT similar to 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb) cfa
CANINE_2:CFAAFFX.15688.1.S1_S_AT similar to 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb) cfa
DROSOPHILA_2:1629927_AT antisense construct a of Pan dm
DROSGENOME1:153026_AT antisense construct a of Pan dm
HG-U133_PLUS_2:201835_S_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U133A:201835_S_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-FOCUS:201835_S_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U133A_2:201835_S_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HU35KSUBA:RC_AA435980_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HUGENEFL:Y12556_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U133A:201834_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U133_PLUS_2:201834_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U133A_2:201834_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
U133_X3P:G5453967_3P_A_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
U133_X3P:G12654368_3P_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U95AV2:35348_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
HG-U95D:73626_F_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit hs
MU11KSUBB:MSA.15571.0_S_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MU11KSUBB:MSA.13815.0_S_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MG-U74AV2:160808_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MOE430A:1424119_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MOUSE430A_2:1424119_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MOUSE430_2:1424119_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MOE430A:1452457_A_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MOUSE430A_2:1452457_A_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MOUSE430_2:1452457_A_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit mm
MU19KSUBA:TC15106_AT Protein kinase, AMP-activated, beta 1 non-catalytic subunit (Prkab1), mRNA mm
MU19KSUBA:TC15106_G_AT Protein kinase, AMP-activated, beta 1 non-catalytic subunit (Prkab1), mRNA mm
MU19KSUBA:TC15107_AT Protein kinase, AMP-activated, beta 1 non-catalytic subunit (Prkab1), mRNA mm
MU19KSUBA:TC15107_G_AT Protein kinase, AMP-activated, beta 1 non-catalytic subunit (Prkab1), mRNA mm
RG-U34A:X95577_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit rn
RAE230A:1386945_A_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit rn
RAT230_2:1386945_A_AT protein kinase, AMP-activated, beta 1 non-catalytic subunit rn
YEAST_2:1774160_AT One of three possible beta-subunits of the Snf1 kinase complex, allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; contains glycogen-binding domain Sc
Protein Similarities
Method ID Description E-Value
blast CAB04480 Hypothetical protein F55F3.1 [Caenorhabditis elegans] ref|NP_510298.1| F55F3.1 [Caenorhabditis elegans] 1.0E-139
blast CAB04480 Hypothetical protein F55F3.1 [Caenorhabditis elegans] ref|NP_510298.1| F55F3.1 [Caenorhabditis elegans] 1.0E-133
blast CAE63088 Hypothetical protein CBG07378 [Caenorhabditis briggsae] 1.0E-121
blast CAE63088 Hypothetical protein CBG07378 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR006828 EMBL-EBI 5-AMP-activated protein kinase, beta subunit, complex-interacting region 6.2E-56
Pfam IPR006828 EMBL-EBI 5-AMP-activated protein kinase, beta subunit, complex-interacting region 6.2E-56
Sequence
Target Sequence 
>C. ELEGANS:178382_S_AT
tttgaggtattcgacgccctcgacaaggatttagcctcttcaaatgccggtgaggctctc
cgcaacagtcacccaactaaagagtcccatgacacaccgaacgatcgtgaactcgaaaaa
cttcaccaattcggacaagagaccccaacacgtgtagatttcaacaaagccgccgcaccg
ccagtactcccaccacacctgcttcaagttattctcaataaagatacacctgtacagtgt
gatccgaatgtgctcccggagcctgatcatgtaatgctcaatcatttatacgcattatcc
atcaaagacggagtaatggtattgtcagcaacacaccgctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGAGGTATTCGACGCCCTCGACA 628 665 439 Antisense
GCCCTCGACAAGGATTTAGCCTCTT 12 287 454 Antisense
TTCAAATGCCGGTGAGGCTCTCCGC 305 683 477 Antisense
CAGTCACCCAACTAAAGAGTCCCAT 232 207 504 Antisense
GACACACCGAACGATCGTGAACTCG 214 367 529 Antisense
AGAGACCCCAACACGTGTAGATTTC 577 57 576 Antisense
TGTAGATTTCAACAAAGCCGCCGCA 679 559 591 Antisense
ACCACACCTGCTTCAAGTTATTCTC 322 85 630 Antisense
CAGTGTGATCCGAATGTGCTCCCGG 98 209 673 Antisense
CTCCCGGAGCCTGATCATGTAATGC 175 235 691 Antisense
GTATTGTCAGCAACACACCGCTATC 215 453 757 Antisense
Sequence Source Affymetrix Proprietary Database