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[178381_at]

Description F32B4.7 /REP_DB=WormBase Gene ID /WP=CE17747 /TR=O62207 /GB=CAB04237.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 17.8
(-3)
A 		26
(-0.2)
A 		30.3
(1.3)
A 		35.1
(3)
A 		17
B 32.3
(3)
A 		1
(-3)
A 		13.7
(-0.6)
A 		20.3
(0.7)
A 		31
C 25.8
(3)
A 		25.6
(2.9)
A 		6.1
(-3)
A 		16
(0)
A 		20
avr 25.3
(3) 		17.5
(-2.4) 		16.7
(-3) 		23.8
(2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.5
(-2)
A 		12.5
(1.2)
A 		0.5
(-3)
A 		17.7
(3)
A 		2
(-2.5)
A 		2.5
(-2.3)
A 		17
B 2.2
(-2.8)
A 		2.1
(-2.8)
A 		27.2
(3)
A 		2.4
(-2.7)
A 		1.3
(-3)
A 		2.2
(-2.8)
A 		26
C 21.2
(-0.4)
A 		4
(-3)
A 		20.5
(-0.5)
A 		43.4
(3)
A 		12.8
(-1.7)
A 		31.5
(1.2)
M 		39
avr 9
(-1.6) 		6.2
(-2.7) 		16.1
(1.1) 		21.2
(3) 		5.4
(-3) 		12.1
(-0.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.5
(0)
A 		5.6
(-1.9)
A 		7.9
(3)
A 		5.1
(-3)
A 		3
B 10.3
(3)
A 		0.3
(-3)
A 		3.2
(-1.3)
A 		4.3
(-0.6)
A 		10
C 8.5
(3)
A 		7.3
(1.9)
A 		2.1
(-3)
A 		2.7
(-2.4)
A 		6
avr 8.4
(3) 		4.4
(-2.5) 		4.4
(-2.5) 		4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-2.2)
A 		4.4
(2.9)
A 		0.1
(-3)
A 		4.5
(3)
A 		0.6
(-2.3)
A 		0.6
(-2.3)
A 		4
B 0.8
(-2.7)
A 		0.7
(-2.8)
A 		6.6
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.8
(-2.7)
A 		6
C 7.9
(1.3)
A 		1.2
(-3)
A 		5.2
(-0.4)
A 		8.7
(1.8)
A 		4.2
(-1.1)
A 		10.5
(3)
M 		9
avr 3.1
(-0.2) 		2.1
(-2.4) 		4
(1.7) 		4.6
(3) 		1.8
(-3) 		4
(1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1921
Sequence Type Exemplar sequence
Representative Public ID F32B4.7 NCBI
Target Description F32B4.7 /REP_DB=WormBase Gene ID /WP=CE17747 /TR=O62207 /GB=CAB04237.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026270
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F32B4.4b.2 ENSEMBL cdna:known chromosome:CEL140:I:11525709:11535414:1 gene:F32B4.4 None
NM_001026270 NCBI Caenorhabditis elegans F32B4.4b (F32B4.4) mRNA, complete cds. None
GENEFINDER00000030041 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11525689:11527311:1 None
SNAP00000030034 ENSEMBL cdna:SNAP chromosome:CEL140:I:11525689:11525916:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11525551-11525847(+) 100.0 100.0
Public Domain and Genome References
Ensembl F32B4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98731 Hypothetical protein F32B4.4b [Caenorhabditis elegans] ref|NP_001021441.1| F32B4.4b [Caenorhabditis elegans] 0.0
blast CAB04233 Hypothetical protein F32B4.4a [Caenorhabditis elegans] ref|NP_001021440.1| F32B4.4a [Caenorhabditis elegans] 0.0
blast CAE60709 Hypothetical protein CBG04377 [Caenorhabditis briggsae] 5.0E-29
blast T21637 hypothetical protein F32B4.7 - Caenorhabditis elegans 2.0E-21
blast T21637 hypothetical protein F32B4.7 - Caenorhabditis elegans 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR003034 EMBL-EBI DNA-binding SAP 2.0E-7
Pfam IPR003034 EMBL-EBI DNA-binding SAP 4.4E-10
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.4E-5
Sequence
Target Sequence 
>C. ELEGANS:178381_AT
gtcgccgaagcaaaatatgccgttggaaagcggaaaattgatcaatgacttgcgtgttag
tgaattgaaggtaagtgaatcattttttccactggaaattccctataaaatgcacttttt
gcagacagagctcgagaagcgtggtttgagtactcaaggagtcaaggttgtgctcactgt
tcgtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCGAAGCAAAATATGCCGTTG 549 475 18 Antisense
AAAATTGATCAATGACTTGCGTGTT 296 133 51 Antisense
ATGACTTGCGTGTTAGTGAATTGAA 351 45 62 Antisense
GAAGGTAAGTGAATCATTTTTTCCA 655 331 84 Antisense
GTGAATCATTTTTTCCACTGGAAAT 194 481 92 Antisense
GGAAATTCCCTATAAAATGCACTTT 645 471 111 Antisense
GCACTTTTTGCAGACAGAGCTCGAG 89 315 129 Antisense
GACAGAGCTCGAGAAGCGTGGTTTG 364 369 141 Antisense
GAGAAGCGTGGTTTGAGTACTCAAG 22 393 151 Antisense
AGGAGTCAAGGTTGTGCTCACTGTT 449 55 174 Antisense
AAGGTTGTGCTCACTGTTCGTTTGA 313 159 181 Antisense
Sequence Source Affymetrix Proprietary Database