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[178379_at]

Description W02H3.1 /REP_DB=WormBase Gene ID /WP=CE03773 /TR=Q23132 /GB=CAA92022.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 42.1
(-0.8)
A 		59.7
(0.5)
A 		12.3
(-3)
A 		93.8
(3)
A 		82
B 30.5
(-3)
A 		73.2
(3)
A 		33.8
(-2.5)
A 		36.5
(-2.2)
A 		43
C 5.1
(-3)
A 		38.8
(-1.2)
A 		34.5
(-1.4)
A 		116.9
(3)
A 		112
avr 25.9
(-3) 		57.2
(0.3) 		26.9
(-2.9) 		82.4
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 4
(-3)
A 		19.2
(-2.2)
A 		113.2
(3)
M 		57.3
(-0.1)
A 		59.2
(0)
A 		44.8
(-0.8)
A 		109
B 25.7
(-3)
A 		42.6
(-1.3)
A 		85
(3)
A 		28
(-2.8)
A 		69.2
(1.4)
A 		51.2
(-0.4)
A 		59
C 30
(-1.7)
A 		71.4
(2.1)
A 		79.4
(2.9)
A 		81
(3)
A 		15.4
(-3)
A 		62.5
(1.3)
A 		66
avr 19.9
(-3) 		44.4
(-1) 		92.5
(3) 		55.4
(-0.1) 		47.9
(-0.7) 		52.8
(-0.3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.3
(3)
A 		13
(1.9)
A 		3.2
(-3)
A 		13.7
(2.2)
A 		12
B 9.7
(-1.9)
A 		18.1
(3)
A 		7.8
(-3)
A 		7.8
(-3)
A 		10
C 1.7
(-3)
A 		11.2
(0.2)
A 		12
(0.4)
A 		19.7
(3)
A 		18
avr 8.9
(-1.9) 		14.1
(3) 		7.7
(-3) 		13.7
(2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.7
(-3)
A 		6.8
(-1.5)
A 		24.7
(3)
M 		14.5
(0.5)
A 		17.9
(1.3)
A 		10.9
(-0.5)
A 		24
B 8.9
(-2.6)
A 		14.2
(-1)
A 		20.6
(0.8)
A 		7.4
(-3)
A 		28.1
(3)
A 		19.1
(0.4)
A 		21
C 11.1
(-0.8)
A 		21.8
(3)
A 		20.2
(2.4)
A 		16.3
(1)
A 		5
(-3)
A 		20.9
(2.7)
A 		17
avr 6.9
(-3) 		14.3
(-0) 		21.8
(3) 		12.7
(-0.7) 		17
(1.1) 		17
(1.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178379_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16262
Sequence Type Exemplar sequence
Representative Public ID W02H3.1 NCBI
Target Description W02H3.1 /REP_DB=WormBase Gene ID /WP=CE03773 /TR=Q23132 /GB=CAA92022.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077457 NCBI Caenorhabditis elegans W02H3.1 (W02H3.1) mRNA, complete cds. 11/11 None
W02H3.1 ENSEMBL cdna:known chromosome:CEL140:X:11102834:11105382:-1 gene:W02H3.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037118 6/11 Cross Hyb Matching Probes None
SNAP00000037117 5/11 Cross Hyb Matching Probes None
GENEFINDER00000037120 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11102833-11105382(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02H3.1
Entrez Gene 189130 Entrez gene
SwissProt Q23132 EMBL-EBI
WormBase CE03773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92022 Hypothetical protein W02H3.1 [Caenorhabditis elegans] ref|NP_509858.1| W02H3.1 [Caenorhabditis elegans] 1.0E-101
blast CAE70702 Hypothetical protein CBG17434 [Caenorhabditis briggsae] 5.0E-30
Sequence
Target Sequence 
>C. ELEGANS:178379_AT
gcagtcgattttgcttctcagacgtttgcccactcttcttacaaaaacgatagaatttca
ttgaaaaaaataatgtctcttgcgtacaaaggccagaatattatcaaaatgtgtgttcat
ttgccgagaaacagcaatgcggggaaatacgcctacgatctcagtcaggttgctcatgaa
attgacattcttgtcttctcgctggacgacgcaaaagacagaaacttcatgtctggttat
ccccgcagaactactctcactaggctgtgccctgaagattacgaaatgaaagaaggaatc
gcagtactgaacgatgaagtagtcagtgctattaataatccaagtgtggtgcaacttctc
gaacacgacatctcattgctcactctttttggaacgtccgaatgcagactcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTCGATTTTGCTTCTCAGACGT 549 311 103 Antisense
ATGTCTCTTGCGTACAAAGGCCAGA 498 47 175 Antisense
GGGAAATACGCCTACGATCTCAGTC 175 495 244 Antisense
TACGATCTCAGTCAGGTTGCTCATG 710 647 256 Antisense
TGTCTTCTCGCTGGACGACGCAAAA 259 559 294 Antisense
GAAACTTCATGTCTGGTTATCCCCG 188 357 323 Antisense
AGAACTACTCTCACTAGGCTGTGCC 598 73 349 Antisense
AGGCTGTGCCCTGAAGATTACGAAA 552 53 364 Antisense
GTGGTGCAACTTCTCGAACACGACA 191 487 448 Antisense
CATTGCTCACTCTTTTTGGAACGTC 552 217 476 Antisense
GGAACGTCCGAATGCAGACTCAACA 603 529 493 Antisense
Sequence Source Affymetrix Proprietary Database