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[178377_at]

Description C11E4.3 /REP_DB=WormBase Gene ID /WP=CE08103 /TR=Q93205 /GB=CAB02660.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 02      6grp_cgc > 54      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 2
(-3)
A 		32.9
(-1.7)
A 		40
(-1.3)
A 		140.1
(3)
P 		138
B 50.6
(1)
P 		41.9
(-0.3)
A 		24.1
(-3)
A 		64
(3)
P 		40
C 37.2
(-1.8)
P 		10.4
(-2.9)
A 		8.5
(-3)
A 		151.4
(3)
P 		143
avr 29.9
(-2.6) 		28.4
(-2.7) 		24.2
(-3) 		118.5
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 6.8
(-2.3)
A 		3.4
(-2.7)
A 		49.2
(3)
P 		1.2
(-3)
A 		38.7
(1.7)
P 		20.9
(-0.5)
A 		48
B 22.9
(0.4)
A 		36.9
(3)
P 		20.5
(0)
A 		4
(-3)
A 		20.6
(0)
A 		5.1
(-2.8)
A 		33
C 14
(-3)
A 		64.9
(3)
P 		18.6
(-2.5)
A 		41.6
(0.3)
A 		16.9
(-2.7)
A 		16.1
(-2.8)
A 		51
avr 14.6
(-2.8) 		35.1
(3) 		29.4
(1.4) 		15.6
(-2.5) 		25.4
(0.2) 		14
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 0.7
(-3)
A 		7.1
(-1.1)
A 		10.5
(-0)
A 		20.5
(3)
P 		20
B 16.1
(3)
P 		10.4
(-0.3)
A 		5.6
(-3)
A 		13.6
(1.6)
P 		11
C 12.3
(-0.5)
P 		3
(-3)
A 		3
(-3)
A 		25.5
(3)
P 		23
avr 9.7
(-1.5) 		6.8
(-2.8) 		6.4
(-3) 		19.9
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.2
(-2.5)
A 		1.2
(-2.5)
A 		10.7
(2.5)
P 		0.3
(-3)
A 		11.7
(3)
P 		5.1
(-0.5)
A 		11
B 8
(0.7)
A 		12.3
(3)
P 		5
(-0.9)
A 		1.1
(-3)
A 		8.4
(0.9)
A 		1.9
(-2.6)
A 		11
C 5.2
(-2.8)
A 		19.8
(3)
P 		4.7
(-3)
A 		8.4
(-1.5)
A 		5.5
(-2.7)
A 		5.4
(-2.7)
A 		15
avr 4.8
(-1.8) 		11.1
(3) 		6.8
(-0.3) 		3.3
(-3) 		8.5
(1) 		4.1
(-2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178377_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17099
Sequence Type Exemplar sequence
Representative Public ID C11E4.3 NCBI
Target Description C11E4.3 /REP_DB=WormBase Gene ID /WP=CE08103 /TR=Q93205 /GB=CAB02660.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077216 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-263) (tag-263) mRNA, complete cds. 11/11 None
GENEFINDER00000031381 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9589771:9596119:1 11/11 None
C11E4.3 ENSEMBL cdna:known chromosome:CEL140:X:9589393:9591637:1 gene:C11E4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031375 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9589392-9591637(+) 97.9 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-263
Ensembl C11E4.3
Entrez Gene 182514 Entrez gene
SwissProt Q93205 EMBL-EBI
WormBase CE08103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02660 Hypothetical protein C11E4.3 [Caenorhabditis elegans] ref|NP_509617.1| Temporarily Assigned Gene name family member (tag-263) [Caenorhabditis elegans] 0.0
blast CAE69788 Hypothetical protein CBG16079 [Caenorhabditis briggsae] 0.0
blast CAB02656 Hypothetical protein C11E4.4 [Caenorhabditis elegans] ref|NP_509618.1| C11E4.4 [Caenorhabditis elegans] 1.0E-112
blast AAB03149 Hypothetical protein C46A5.2 [Caenorhabditis elegans] ref|NP_501276.2| C46A5.2 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 3.9E-7
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 9.2E-5
Pfam IPR001873 EMBL-EBI Na+ channel, amiloride-sensitive 4.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509617.1 1 54-76
C11E4.3 1 54-76
GENEFINDER00000031381 2 3-25,385-407
Sequence
Target Sequence 
>C. ELEGANS:178377_AT
gaagagttgttatgcgtcgaggaatttgttatcaaacacgaaaaaatgttaatcaatcgg
aagccgatgatattggaagaattgtgttcagcttgaaagctccaaccagttatacaagtg
tcaaaaccaactacacacaaacacaattgatagtttatattactgataatcatgatgttg
tcaccgaatttccaaggttctacttgtatccaaatgaatggaatcgaatgcggttcacag
cgagactgattgagttgattcaaaacaagggagtatgcacaaatcacatatttggaagag
acgccgaatgtttggtccgcaagtggtatctatcgaacataataattccttttaattgca
cactaccatatctcaagagcatcactaaactaccaccaacgactggtgtttgcaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGTTGTTATGCGTCGAGGAAT 434 339 647 Antisense
CAGCTTGAAAGCTCCAACCAGTTAT 455 195 735 Antisense
GATAATCATGATGTTGTCACCGAAT 280 423 811 Antisense
GTCACCGAATTTCCAAGGTTCTACT 31 465 826 Antisense
CGAATGCGGTTCACAGCGAGACTGA 598 249 871 Antisense
AGAGACGCCGAATGTTTGGTCCGCA 672 55 943 Antisense
GGTCCGCAAGTGGTATCTATCGAAC 500 501 960 Antisense
ATTCCTTTTAATTGCACACTACCAT 622 7 991 Antisense
GCACACTACCATATCTCAAGAGCAT 440 317 1004 Antisense
AAGAGCATCACTAAACTACCACCAA 149 155 1021 Antisense
ACCAACGACTGGTGTTTGCAAGCCA 209 83 1041 Antisense
Sequence Source Affymetrix Proprietary Database