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[178376_s_at]

Description ZK899.2 /REP_DB=WormBase Gene ID /WP=CE15467 /TR=Q23660 /GB=CAA85502.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 61      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 65      6grp_total > 61      4grp_total > 56      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1846
1 2 3 4 range
A 722.4
(-1.4)
P 		1374.8
(0.8)
P 		2062.1
(3)
P 		216.3
(-3)
P 		1846
B 751.9
(-1.2)
P 		1802.2
(2.3)
P 		2016.1
(3)
P 		216.6
(-3)
P 		1800
C 819
(-0.8)
P 		1511.1
(1.7)
P 		1884.5
(3)
P 		217.9
(-3)
P 		1667
avr 764.4
(-1.1) 		1562.7
(1.6) 		1987.6
(3) 		216.9
(-3) 		1771

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 707
1 2 3 4 5 6 range
A 1150
(-2.5)
P 		1130.4
(-2.8)
P 		1428.7
(1.3)
P 		1556.8
(3)
P 		1114.1
(-3)
P 		1187.2
(-2)
P 		443
B 1137.8
(-0.8)
P 		1134.4
(-0.9)
P 		1447.2
(2.8)
P 		1466.5
(3)
P 		950.9
(-3)
P 		1099.5
(-1.3)
P 		516
C 1047.5
(-2.9)
P 		1036.8
(-3)
P 		1657.6
(3)
P 		1534.5
(1.8)
P 		1187.3
(-1.5)
P 		1075.6
(-2.6)
P 		621
avr 1111.8
(-2.6) 		1100.5
(-2.8) 		1511.2
(2.9) 		1519.3
(3) 		1084.1
(-3) 		1120.8
(-2.5) 		435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 625
1 2 3 4 range
A 263
(-0.3)
P 		298.4
(0.2)
P 		539.1
(3)
P 		31.7
(-3)
P 		507
B 239.8
(-0.2)
P 		445.1
(2.7)
P 		467.2
(3)
P 		46.2
(-3)
P 		421
C 271.1
(-0.7)
P 		434.4
(0.8)
P 		656.8
(3)
P 		36.7
(-3)
P 		620
avr 258
(-0.4) 		392.6
(1.1) 		554.4
(3) 		38.2
(-3) 		516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 212
(-3)
P 		402
(3)
P 		311.1
(0.1)
P 		394.9
(2.8)
P 		336.2
(0.9)
P 		289.1
(-0.6)
P 		190
B 395.9
(1.6)
P 		377.6
(-0.3)
P 		351.4
(-3)
P 		388.4
(0.8)
P 		386.4
(0.6)
P 		410
(3)
P 		59
C 388.2
(1.2)
P 		316.3
(-2.6)
P 		421.9
(3)
P 		308.6
(-3)
P 		384.2
(1)
P 		360
(-0.3)
P 		113
avr 332
(-3) 		365.3
(2.4) 		361.5
(1.8) 		364
(2.2) 		368.9
(3) 		353
(0.4) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178376_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16463
Sequence Type Exemplar sequence
Representative Public ID ZK899.2 NCBI
Target Description ZK899.2 /REP_DB=WormBase Gene ID /WP=CE15467 /TR=Q23660 /GB=CAA85502.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077188(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077188 NCBI Caenorhabditis elegans ZK899.2 (ZK899.2) mRNA, complete cds. 11/11 None
GENEFINDER00000025057 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9447791:9451922:-1 11/11 None
SNAP00000025038 ENSEMBL cdna:SNAP chromosome:CEL140:X:9450215:9451922:-1 11/11 None
ZK899.2.1 ENSEMBL cdna:known chromosome:CEL140:X:9450175:9451926:-1 gene:ZK899.2 11/11 None
ZK899.2.2 ENSEMBL cdna:known chromosome:CEL140:X:9450215:9451924:-1 gene:ZK899.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9450214-9451922(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK899.2
Entrez Gene 181171 Entrez gene
SwissProt Q23660 EMBL-EBI
WormBase CE15467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85502 Hypothetical protein ZK899.2 [Caenorhabditis elegans] ref|NP_509589.1| ZK899.2 [Caenorhabditis elegans] 0.0
blast CAE69817 Hypothetical protein CBG16133 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509589.1 9 55-74,81-103,107-129,149-171,191-213,232-254,264-283,303-320,405-427
ZK899.2.1 9 55-74,81-103,107-129,149-171,191-213,232-254,264-283,303-320,405-427
ZK899.2.2 9 55-74,81-103,107-129,149-171,191-213,232-254,264-283,303-320,405-427
GENEFINDER00000025057 9 55-74,81-103,107-129,149-171,191-213,232-254,264-283,303-320,405-427
SNAP00000025038 9 55-74,81-103,107-129,149-171,191-213,232-254,264-283,303-320,405-427
Sequence
Target Sequence 
>C. ELEGANS:178376_S_AT
aaccatccaatttgctcttctttaccacccacttcatgacattttcaaggttcattccga
gtacacaacaattgcatttctctccatctatgcattgatagttattttcgcggatcgcag
gaacaaaaatgaaaattctcgtgttggaaacaagtattggtttgatgaacttgcggcggc
aattgccattgagtaccttttcttcatgattgccgttttgatatctgatccagttagtat
tgtcagtgatggactccatcaaccaattggaccttgcaatgaaactcagaaggttcaaac
tccgactggtcttgtgcttcaaaagcagaagtatttctgtacagacaactacgatgagaa
gtacatcgatttccattgtgtgccaggaggaccaccgcaacagccagaaccaggtgtgcc
gttggaatggtacgcggtgtgtggaacagactacgagaacagagcagaatacgttttcat
catttggttcatctgcattctctacagctgtatttggtatcaaatcgcagcttgttctgg
cgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCATCCAATTTGCTCTTCTTTAC 705 147 750 Antisense
ACCACCCACTTCATGACATTTTCAA 583 85 773 Antisense
CATTTCTCTCCATCTATGCATTGAT 471 215 824 Antisense
TGAACTTGCGGCGGCAATTGCCATT 480 573 915 Antisense
AATTGCCATTGAGTACCTTTTCTTC 196 179 930 Antisense
ACCTTTTCTTCATGATTGCCGTTTT 344 83 944 Antisense
TCAAACTCCGACTGGTCTTGTGCTT 362 629 1044 Antisense
GTACATCGATTTCCATTGTGTGCCA 14 461 1110 Antisense
AACAGCCAGAACCAGGTGTGCCGTT 58 135 1148 Antisense
TTGGTTCATCTGCATTCTCTACAGC 428 709 1233 Antisense
AAATCGCAGCTTGTTCTGGCGTCAC 661 115 1271 Antisense
Sequence Source Affymetrix Proprietary Database