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[178375_at]

Description D1053.2 /REP_DB=WormBase Gene ID /WP=CE03100 /TR=Q18939 /GB=CAA91450.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 21.6
(-1)
A 		27.8
(-0.3)
A 		2.2
(-3)
A 		59.7
(3)
A 		58
B 2.4
(-3)
A 		60
(3)
A 		25.3
(-0.6)
A 		30.9
(-0)
A 		58
C 16.7
(-2.4)
A 		71.3
(3)
A 		35.8
(-0.5)
A 		11.1
(-3)
A 		60
avr 13.6
(-3) 		53
(3) 		21.1
(-1.9) 		33.9
(0.1) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.4
(-3)
A 		7.2
(-2)
A 		16.2
(1.4)
A 		20.5
(3)
A 		14.2
(0.7)
A 		9.5
(-1.1)
A 		16
B 33.4
(1.7)
A 		2.9
(-3)
A 		41.5
(3)
A 		30.1
(1.2)
A 		34
(1.8)
A 		5
(-2.7)
A 		39
C 16.2
(0.3)
A 		11.9
(-1.1)
A 		22.9
(2.4)
A 		15.2
(-0.1)
A 		24.8
(3)
A 		6
(-3)
A 		19
avr 18
(0.3) 		7.3
(-2.9) 		26.9
(3) 		21.9
(1.5) 		24.3
(2.2) 		6.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 7.9
(2.4)
A 		6
(1)
A 		0.6
(-3)
A 		8.7
(3)
A 		8
B 0.8
(-3)
A 		14.8
(3)
A 		5.9
(-0.8)
A 		6.6
(-0.5)
A 		14
C 5.5
(-1.8)
A 		20.5
(3)
A 		12.5
(0.4)
A 		1.9
(-3)
A 		19
avr 4.7
(-3) 		13.8
(3) 		6.3
(-1.9) 		5.7
(-2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.6
(-0.5)
A 		3.5
(0.7)
A 		5.2
(3)
A 		4.3
(1.8)
A 		2.3
(-1)
A 		4
B 11.6
(2)
A 		1
(-3)
A 		10.1
(1.3)
A 		8
(0.3)
A 		13.8
(3)
A 		1.9
(-2.6)
A 		13
C 6
(1)
A 		3.6
(-1.4)
A 		5.8
(0.8)
A 		3
(-2)
A 		8
(3)
A 		2
(-3)
A 		6
avr 6.1
(0.6) 		2.4
(-2.7) 		6.5
(1) 		5.4
(0) 		8.7
(3) 		2.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16454
Sequence Type Exemplar sequence
Representative Public ID D1053.2 NCBI
Target Description D1053.2 /REP_DB=WormBase Gene ID /WP=CE03100 /TR=Q18939 /GB=CAA91450.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077562 NCBI Caenorhabditis elegans D1053.2 (D1053.2) mRNA, complete cds. 11/11 None
D1053.2 ENSEMBL cdna:known chromosome:CEL140:X:11728072:11728834:1 gene:D1053.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035553 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035558 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11728071-11728834(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1053.2
Entrez Gene 183912 Entrez gene
SwissProt Q18939 EMBL-EBI
WormBase CE03100 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91450 Hypothetical protein D1053.2 [Caenorhabditis elegans] ref|NP_509963.1| D1053.2 [Caenorhabditis elegans] 1.0E-85
blast CAA93538 Hypothetical protein W06D11.4 [Caenorhabditis elegans] ref|NP_510056.1| W06D11.4 [Caenorhabditis elegans] 4.0E-20
blast CAA91760 Hypothetical protein F54F7.7 [Caenorhabditis elegans] ref|NP_509981.2| F54F7.7 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:178375_AT
cccaagctgtacccaagtcattttttcaaagacaatataaaaatacacagtgcactttga
tgtgcttaaatgaaattgagagcatccaggaactatttttcaatttaaacgacgttgaga
cacgttcattaaaagcatatctggtggatcgtattaatgagatccagacccaagccacgg
tgattgtggtgaacaacgttcgtttttcgccggagctcaagttggagctgaaagagatct
tgtcgaaatgcattgacggaacgcggatcatttcatcagagtcgattgttccacgtcccc
gttctcaaagctcgacttctcgtcgtatcgatgattttgtgaaaatcacggacgagcgtc
ttcttcatcttgtggaaaacaatacgtcttggactggtgacaaagttccgttttatctca
ctgagatcaaccgcaataaggtaatgatcgtcgacgccctttcttcttcccaactcctct
ctcatcaacgtgtcttcgtgctcgggtcaacttctgattttccggtgtattttctattta
agatctccccttcactccctatagatctttcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCAAGCTGTACCCAAGTCATTTTT 400 257 35 Antisense
TCCAGACCCAAGCCACGGTGATTGT 96 589 197 Antisense
TCATCAGAGTCGATTGTTCCACGTC 356 613 307 Antisense
AAGCTCGACTTCTCGTCGTATCGAT 599 149 342 Antisense
ATCACGGACGAGCGTCTTCTTCATC 244 27 379 Antisense
AAAGTTCCGTTTTATCTCACTGAGA 245 123 436 Antisense
AAGGTAATGATCGTCGACGCCCTTT 113 161 472 Antisense
GCTCGGGTCAACTTCTGATTTTCCG 442 295 534 Antisense
TGATTTTCCGGTGTATTTTCTATTT 493 561 549 Antisense
TTTCTATTTAAGATCTCCCCTTCAC 218 617 565 Antisense
TTCACTCCCTATAGATCTTTCATCT 463 687 585 Antisense
Sequence Source Affymetrix Proprietary Database