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[178374_at]

Description T02G6.4 /REP_DB=WormBase Gene ID /WP=CE18175 /TR=O62354 /GB=CAB04669.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 2.5
(-3)
A 		33.1
(-0.2)
A 		16
(-1.8)
A 		68.1
(3)
A 		66
B 29.5
(3)
A 		26.8
(2.3)
A 		5.3
(-3)
A 		12.5
(-1.2)
A 		24
C 30.9
(1.9)
A 		28.8
(1.4)
A 		7.6
(-3)
A 		36.4
(3)
A 		29
avr 21
(-0.7) 		29.6
(1.1) 		9.6
(-3) 		39
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 18.2
(0)
A 		5.2
(-2.4)
A 		14.6
(-0.7)
A 		18.5
(0.1)
A 		34.3
(3)
A 		2
(-3)
A 		32
B 1.9
(-2.7)
A 		2.1
(-2.7)
A 		9
(-1)
A 		1.9
(-2.7)
A 		24.9
(3)
A 		0.8
(-3)
A 		24
C 1.5
(-3)
A 		17.6
(0.1)
A 		32.4
(3)
A 		8.3
(-1.7)
A 		4.9
(-2.3)
A 		18.9
(0.4)
A 		31
avr 7.2
(-3) 		8.3
(-2.5) 		18.7
(1.9) 		9.6
(-2) 		21.4
(3) 		7.2
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		7.2
(1.2)
A 		4.2
(-0.8)
A 		10
(3)
A 		9
B 9.4
(3)
A 		6.6
(1)
A 		1.2
(-3)
A 		2.7
(-1.9)
A 		8
C 10.2
(3)
A 		8.3
(1.5)
A 		2.7
(-3)
A 		6.1
(-0.3)
A 		8
avr 6.8
(2.2) 		7.4
(3) 		2.7
(-3) 		6.3
(1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.4
(-1.2)
A 		1.9
(-2.2)
A 		3.2
(-1.4)
A 		4.7
(-0.5)
A 		10.4
(3)
A 		0.5
(-3)
A 		10
B 0.7
(-2.8)
A 		0.7
(-2.8)
A 		2.2
(-1.8)
A 		0.5
(-2.9)
A 		10.1
(3)
A 		0.3
(-3)
A 		10
C 0.6
(-3)
A 		5.4
(0.8)
A 		8.2
(3)
A 		1.7
(-2.1)
A 		1.6
(-2.2)
A 		6.3
(1.5)
A 		8
avr 1.6
(-3) 		2.7
(-1.9) 		4.5
(-0) 		2.3
(-2.3) 		7.4
(3) 		2.4
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178374_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1905
Sequence Type Exemplar sequence
Representative Public ID T02G6.4 NCBI
Target Description T02G6.4 /REP_DB=WormBase Gene ID /WP=CE18175 /TR=O62354 /GB=CAB04669.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060600 NCBI Caenorhabditis elegans T02G6.4 (T02G6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017979 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11817064:11821758:-1 11/11 None
T02G6.4 ENSEMBL cdna:known chromosome:CEL140:I:11817064:11822995:-1 gene:T02G6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017966 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11816994-11822926(-) 92.9 100.0
Public Domain and Genome References
Gene Title
Ensembl T02G6.4
Entrez Gene 187999 Entrez gene
SwissProt O62354 EMBL-EBI
WormBase CE18175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04669 Hypothetical protein T02G6.4 [Caenorhabditis elegans] ref|NP_493001.1| T02G6.4 [Caenorhabditis elegans] 1.0E-170
blast CAB04669 Hypothetical protein T02G6.4 [Caenorhabditis elegans] ref|NP_493001.1| T02G6.4 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493001.1 2 138-160,180-202
T02G6.4 2 138-160,180-202
GENEFINDER00000017979 3 68-90,111-133,148-170
Sequence
Target Sequence 
>C. ELEGANS:178374_AT
gtaatttcagattgccttctaggctgcttggattcgcggccccttttttatttttttcaa
attatactttattctggatgcttggtgggcctcctcaagcttcttctgatcttttgcaac
tttgacttttttgtggaaacattcgttttagtgaggagaaaatatttaatgtttcaaagt
ttcaatttttctgttctaataacagggttgaatcaaattaaattcccctttttatacctg
cctagtttcagggtgaaaaccaacgggcgtctgtgtgatgcccatcaattttttttttca
actttgaacaattgcagatgctccaaattggaaatcatggaagaggcggtaaaaccaatg
ggcgtcagtgtgatgccctccaatttttttcaaactttgacaatcacatttacaggctca
caggctggagctgcacctatttggagatgccagcgccgcagcatgtggagctgttgcata
cctacgacgtactacaacaactactcaaatgctttgaagattgcttggagaaccggtcaa
gatttgatttttctcgagttgtttttcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTTCAGATTGCCTTCTAGGCT 345 463 379 Antisense
TTCTAGGCTGCTTGGATTCGCGGCC 347 691 395 Antisense
AGCTTCTTCTGATCTTTTGCAACTT 386 79 476 Antisense
CCTTTTTATACCTGCCTAGTTTCAG 626 265 605 Antisense
GAAAACCAACGGGCGTCTGTGTGAT 589 351 633 Antisense
AATGGGCGTCAGTGTGATGCCCTCC 614 163 735 Antisense
GACAATCACATTTACAGGCTCACAG 126 365 777 Antisense
CAGGCTCACAGGCTGGAGCTGCACC 399 207 791 Antisense
GCACCTATTTGGAGATGCCAGCGCC 689 313 811 Antisense
TGTGGAGCTGTTGCATACCTACGAC 345 555 842 Antisense
GATTTTTCTCGAGTTGTTTTTCAGG 333 429 924 Antisense
Sequence Source Affymetrix Proprietary Database