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[178373_at]

Description T15D6.1 /REP_DB=WormBase Gene ID /WP=CE13680 /TR=O02313 /GB=CAB05627.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 29.7
(3)
A 		4.4
(-3)
A 		15.8
(-0.3)
A 		23.2
(1.5)
A 		25
B 35.1
(3)
A 		8.7
(-3)
A 		15.1
(-1.5)
A 		20.9
(-0.2)
A 		26
C 5.8
(-3)
A 		10.2
(-2.1)
A 		13.7
(-1.4)
A 		36.1
(3)
A 		30
avr 23.5
(2) 		7.8
(-3) 		14.9
(-0.7) 		26.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.8
(-2.1)
A 		2.7
(-3)
A 		44.5
(3)
A 		20.6
(-0.4)
A 		5.8
(-2.6)
A 		13.8
(-1.4)
A 		42
B 20.4
(3)
A 		1.8
(-3)
A 		4.6
(-2.1)
A 		6
(-1.6)
A 		10.8
(-0.1)
A 		9.8
(-0.4)
A 		19
C 1.2
(-3)
A 		27.7
(3)
A 		5.5
(-2)
A 		2.9
(-2.6)
A 		3.5
(-2.5)
A 		3.7
(-2.4)
A 		27
avr 10.1
(-1.2) 		10.7
(-0.9) 		18.2
(3) 		9.8
(-1.4) 		6.7
(-3) 		9.1
(-1.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.8
(3)
A 		0.9
(-3)
A 		4.1
(-1.1)
A 		3.4
(-1.5)
A 		10
B 11.2
(3)
A 		2.1
(-3)
A 		3.5
(-2.1)
A 		4.5
(-1.4)
A 		9
C 1.9
(-3)
A 		2.9
(-1.6)
A 		4.8
(1.1)
A 		6.1
(3)
A 		4
avr 8
(3) 		2
(-3) 		4.1
(-0.9) 		4.7
(-0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.6
(-2.6)
A 		1
(-3)
A 		9.7
(3)
A 		5.2
(-0.1)
A 		1.7
(-2.5)
A 		3.4
(-1.3)
A 		9
B 7.1
(3)
A 		0.6
(-3)
A 		1.1
(-2.5)
A 		1.6
(-2.1)
A 		4.4
(0.5)
A 		3.7
(-0.1)
A 		7
C 0.4
(-3)
A 		8.5
(3)
A 		1.4
(-2.3)
A 		0.6
(-2.9)
A 		1.1
(-2.5)
A 		1.2
(-2.4)
A 		8
avr 3
(-0.9) 		3.4
(0.5) 		4.1
(3) 		2.5
(-2.6) 		2.4
(-3) 		2.8
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178373_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.679
Sequence Type Exemplar sequence
Representative Public ID T15D6.1 NCBI
Target Description T15D6.1 /REP_DB=WormBase Gene ID /WP=CE13680 /TR=O02313 /GB=CAB05627.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060731(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060731 NCBI Caenorhabditis elegans T15D6.1 (T15D6.1) mRNA, complete cds. 11/11 A 
T15D6.1 ENSEMBL cdna:known chromosome:CEL140:I:12379472:12380769:1 gene:T15D6.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012740 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12379402-12380700(+) 100.0 100.0
Public Domain and Genome References
Ensembl T15D6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03540 Hypothetical protein T15D6.1 [Caenorhabditis elegans] emb|CAB05627.1| Hypothetical protein T15D6.1 [Caenorhabditis elegans] ref|NP_493132.1| T15D6.1 [Caenorhabditis elegans] 1.0E-171
blast CAB03530 Hypothetical protein T09E11.3 [Caenorhabditis elegans] ref|NP_493131.1| T09E11.3 [Caenorhabditis elegans] 1.0E-150
blast AAB96709 Hypothetical protein F49D11.3 [Caenorhabditis elegans] ref|NP_492846.1| F49D11.3 [Caenorhabditis elegans] 6.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178373_AT
ttaagtttatacatcctctggagccaattcaaaaaggaacggtaaaatttgcattcatcc
gggaccccctgaaacgattcgtttcgttctacctcgacaaatgtgttagagaaaaacact
gttacgattgcggcacgaatatgagatgcgtcgtagaaaaagtgtacactaatctgaaaa
agattcaaaattcgtggcatggaacttcagaacttggatacgtggagcaacatgctgctc
caatgtcctggaactgcaatttccacaaagatatcgaaagttgggagctgataccgattg
gatcggatgcaaatgaaagaactattgcaattgaacgattgtcgggtctattaaagaaac
agggtgtaaatcagacattgattgaaaaagttcaagaaggaaggaaaagtggcgaaacgg
agcactctacacatgcttccaatgctcgctttgaagctgaacgaataatacaaaaggacc
cttacattcagaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAGTTTATACATCCTCTGGAGCC 385 681 314 Antisense
TTATACATCCTCTGGAGCCAATTCA 604 679 320 Antisense
TGAAACGATTCGTTTCGTTCTACCT 513 571 383 Antisense
AACACTGTTACGATTGCGGCACGAA 104 137 428 Antisense
GCGGCACGAATATGAGATGCGTCGT 566 293 443 Antisense
GATGCGTCGTAGAAAAAGTGTACAC 654 405 458 Antisense
AAAGATATCGAAAGTTGGGAGCTGA 648 91 580 Antisense
AACGGAGCACTCTACACATGCTTCC 22 145 729 Antisense
GCACTCTACACATGCTTCCAATGCT 143 317 735 Antisense
CTTCCAATGCTCGCTTTGAAGCTGA 458 219 749 Antisense
CAAAAGGACCCTTACATTCAGAATT 158 191 784 Antisense
Sequence Source Affymetrix Proprietary Database