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[178372_at]

Description ZK829.3 /REP_DB=WormBase Gene ID /WP=CE27561 /TR=Q23620 /GB=CAA98073.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 9.7
(-3)
A 		95.1
(2)
P 		112.5
(3)
P 		26
(-2)
A 		103
B 7.6
(-2.9)
A 		141.2
(3)
P 		130.2
(2.5)
P 		5.9
(-3)
A 		135
C 7.8
(-3)
A 		117.2
(1.9)
P 		141.5
(3)
P 		20.7
(-2.4)
A 		134
avr 8.4
(-3) 		117.8
(2.5) 		128.1
(3) 		17.5
(-2.5) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 39.8
(-1.3)
A 		74.2
(3)
P 		59.7
(1.2)
A 		63.9
(1.7)
P 		37.9
(-1.5)
A 		26.2
(-3)
A 		48
B 26.9
(-1.3)
A 		85.1
(3)
P 		28.8
(-1.2)
P 		60.5
(1.2)
P 		26.1
(-1.4)
P 		4
(-3)
A 		81
C 26.6
(-2.8)
A 		78.8
(2.9)
P 		79.5
(3)
A 		54.7
(0.3)
P 		40.6
(-1.3)
A 		25
(-3)
P 		55
avr 31.1
(-1.8) 		79.4
(3) 		56
(0.7) 		59.7
(1.1) 		34.9
(-1.4) 		18.4
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 3.5
(-3)
A 		20.6
(1)
P 		29.4
(3)
P 		3.8
(-2.9)
A 		26
B 2.4
(-2.8)
A 		34.9
(3)
P 		30.2
(2.2)
P 		1.3
(-3)
A 		34
C 2.6
(-3)
A 		33.7
(1)
P 		49.3
(3)
P 		3.5
(-2.9)
A 		47
avr 2.8
(-3) 		29.7
(1.8) 		36.3
(3) 		2.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.3
(-2.7)
A 		26.4
(3)
P 		13
(-1)
A 		16.2
(-0.1)
P 		11.4
(-1.5)
A 		6.4
(-3)
A 		20
B 9.4
(-1.2)
A 		28.3
(3)
P 		7
(-1.8)
P 		16
(0.2)
P 		10.6
(-1)
P 		1.5
(-3)
A 		27
C 9.9
(-2.4)
A 		24
(3)
P 		20.2
(1.5)
A 		11
(-2)
P 		13.1
(-1.2)
A 		8.4
(-3)
P 		16
avr 8.9
(-2) 		26.2
(3) 		13.4
(-0.7) 		14.4
(-0.4) 		11.7
(-1.2) 		5.4
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8678
Sequence Type Exemplar sequence
Representative Public ID ZK829.3 NCBI
Target Description ZK829.3 /REP_DB=WormBase Gene ID /WP=CE27561 /TR=Q23620 /GB=CAA98073.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069863(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069863 NCBI Caenorhabditis elegans ZK829.3 (ZK829.3) mRNA, complete cds. 10/11 A 
SNAP00000012760 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11943568:11945406:-1 10/11 None
GENEFINDER00000012781 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11944086:11945535:-1 10/11 None
ZK829.3 ENSEMBL cdna:known chromosome:CEL140:IV:11943284:11945690:-1 gene:ZK829.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11944361-11945658(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK829.3
Entrez Gene 178128 Entrez gene
SwissProt Q23620 EMBL-EBI
WormBase CE27561 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98073 Hypothetical protein ZK829.3 [Caenorhabditis elegans] ref|NP_502264.1| ZK829.3 [Caenorhabditis elegans] 0.0
blast CAE62151 Hypothetical protein CBG06197 [Caenorhabditis briggsae] 0.0
blast CAA98073 Hypothetical protein ZK829.3 [Caenorhabditis elegans] ref|NP_502264.1| ZK829.3 [Caenorhabditis elegans] 1.0E-177
blast CAA98073 Hypothetical protein ZK829.3 [Caenorhabditis elegans] ref|NP_502264.1| ZK829.3 [Caenorhabditis elegans] 1.0E-166
blast CAE62151 Hypothetical protein CBG06197 [Caenorhabditis briggsae] 1.0E-156
blast CAE62151 Hypothetical protein CBG06197 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502264.1 1 12-29
ZK829.3 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:178372_AT
atgcagattgatgctccaactccacttgaacacttatcaataaagaattcaatcgtgaaa
gaggatcatgtaatctgtatgtcacatttggtactttatgaagatggtaccacaattctt
tcactgttaaaacatttcaaaaactcggctgccaagataatgatctacgcagctagcgtc
aggcaagccaattttctctctttctctaatcctcttgtctattttagtgacagtctctat
aaagccctcgaagaatattctgaaaatgtggaagtggttccatggatgcttccagaagct
aaaaaacgaggagagttcgataaattgaagttagatccaaattattcaaaagccggaact
gaaggaagtcttacgcattgcttcttacgatatgctccagttgttcgaaaattaactctt
atagatttagaaactttgaaattcaatgcaattccatttaaccccgattatactctcagt
aaaggaatcacaagtatgataactgatggatggaaactaaaaaagttaacaacttaccgt
gtcacaatgaactcccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGATTGATGCTCCAACTCCAC 687 43 400 Antisense
GATGGTACCACAATTCTTTCACTGT 708 407 502 Antisense
GATCTACGCAGCTAGCGTCAGGCAA 422 419 561 Antisense
TCAGGCAAGCCAATTTTCTCTCTTT 252 623 578 Antisense
TTCTCTAATCCTCTTGTCTATTTTA 315 691 601 Antisense
TGACAGTCTCTATAAAGCCCTCGAA 334 571 627 Antisense
GAAGTGGTTCCATGGATGCTTCCAG 581 335 670 Antisense
AAGTCTTACGCATTGCTTCTTACGA 39 157 765 Antisense
GCTTCTTACGATATGCTCCAGTTGT 201 305 779 Antisense
ATTTAACCCCGATTATACTCTCAGT 377 9 855 Antisense
TACCGTGTCACAATGAACTCCCGTA 17 651 934 Antisense
Sequence Source Affymetrix Proprietary Database