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[178371_at]

Description F45E6.6 /REP_DB=WormBase Gene ID /WP=CE17830 /TR=O62242 /GB=CAA92182.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 04      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 31.1
(-0.5)
A 		10.4
(-2.6)
A 		6.2
(-3)
A 		65.8
(3)
A 		60
B 2.8
(-3)
A 		3.2
(-2.9)
A 		6.3
(-2)
A 		23.7
(3)
A 		21
C 11.8
(-1.5)
A 		3.1
(-3)
A 		5.2
(-2.6)
A 		37.2
(3)
A 		34
avr 15.2
(-1.4) 		5.6
(-3) 		5.9
(-3) 		42.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 2.1
(-3)
A 		7.5
(-1.6)
A 		25.7
(3)
A 		2.9
(-2.8)
A 		20.5
(1.7)
A 		21.5
(1.9)
A 		24
B 30.9
(1.1)
A 		22.3
(-0.2)
A 		2.6
(-3)
A 		3.3
(-2.9)
A 		3.6
(-2.9)
A 		44.3
(3)
A 		42
C 10
(-2.3)
A 		5.7
(-3)
A 		42.3
(3)
A 		30.5
(1.1)
A 		11.2
(-2.1)
A 		23.4
(-0.1)
A 		37
avr 14.3
(-2.2) 		11.8
(-3) 		23.5
(0.9) 		12.2
(-2.9) 		11.8
(-3) 		29.7
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.3
(3)
A 		2.3
(-2.6)
A 		1.6
(-3)
A 		9.6
(1.9)
A 		10
B 0.9
(-2.9)
A 		0.8
(-3)
A 		1.4
(-2.1)
A 		5
(3)
A 		4
C 3.9
(0.3)
A 		0.9
(-3)
A 		1.8
(-2)
A 		6.3
(3)
A 		5
avr 5.4
(1.3) 		1.3
(-3) 		1.6
(-2.7) 		7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.7
(-0.6)
A 		5.6
(2.4)
A 		0.7
(-2.7)
A 		6.2
(3)
A 		5.2
(2)
A 		6
B 10.7
(0.8)
A 		7.4
(-0.4)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		1.5
(-2.7)
A 		16.5
(3)
A 		16
C 3.7
(-1.7)
A 		1.7
(-3)
A 		10.8
(3)
A 		6.1
(-0.1)
A 		3.6
(-1.7)
A 		7.8
(1)
A 		9
avr 4.9
(-1.1) 		3.9
(-1.9) 		5.7
(-0.4) 		2.6
(-3) 		3.8
(-2) 		9.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178371_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16456
Sequence Type Exemplar sequence
Representative Public ID F45E6.6 NCBI
Target Description F45E6.6 /REP_DB=WormBase Gene ID /WP=CE17830 /TR=O62242 /GB=CAA92182.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077696 NCBI Caenorhabditis elegans F45E6.6 (F45E6.6) mRNA, complete cds. 11/11 None
SNAP00000017827 ENSEMBL cdna:SNAP chromosome:CEL140:X:12502788:12503252:-1 10/11 None
GENEFINDER00000017830 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12502788:12503258:-1 10/11 None
F45E6.6 ENSEMBL cdna:known chromosome:CEL140:X:12502506:12503252:-1 gene:F45E6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12502505-12503252(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-19
Ensembl F45E6.6
Entrez Gene 181407 Entrez gene
SwissProt O62242 EMBL-EBI
WormBase CE17830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92182 Hypothetical protein F45E6.6 [Caenorhabditis elegans] ref|NP_510097.1| F45E6.6 [Caenorhabditis elegans] 2.0E-73
blast CAA92182 Hypothetical protein F45E6.6 [Caenorhabditis elegans] ref|NP_510097.1| F45E6.6 [Caenorhabditis elegans] 3.0E-64
blast CAB60456 Hypothetical protein ZK662.5 [Caenorhabditis elegans] ref|NP_510586.1| ZK662.5 [Caenorhabditis elegans] 2.0E-48
blast CAB60456 Hypothetical protein ZK662.5 [Caenorhabditis elegans] ref|NP_510586.1| ZK662.5 [Caenorhabditis elegans] 5.0E-48
blast CAB01908 Hypothetical protein ZK662.4 [Caenorhabditis elegans] emb|CAB01901.1| Hypothetical protein ZK662.4 [Caenorhabditis elegans] ref|NP_510587.1| abnormal cell LINeage family member (lin-15B) [Caenorhabditis elegans] emb|CAA82854.1| lin-15B [Caenorhabditis elegans] gb|AAA20089.1| lin-15B protein gb|AAA20088.1| lin-15B protein 5.0E-37
Sequence
Target Sequence 
>C. ELEGANS:178371_AT
gaggacataatgcatcaaacccggcaacggactcgacttccagcagtgcaacaaagacaa
cagctgtggaccaagacacaaccgagctcatggcacgtttctttgtcagccaaggaattg
cgttagaatgtgctcaggaatcacctttccaagagctcataaaacatattagcccaaact
gcatggttccaaaaacagatgagcagacgagggctatggacaaaatttgttcagcttcaa
agccactagtcaattaccaaaagactgatgggccactcagtgctaccattgacatcacag
gagaaaaggatcaaaaatatattgcgctttccattcactactttgaggatttgtacgagc
gcaaaagtgcagtttatttgcggaagttgatactcgggacata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGACATAATGCATCAAACCCGGC 457 403 29 Antisense
ATCAAACCCGGCAACGGACTCGACT 703 23 42 Antisense
TCCAGCAGTGCAACAAAGACAACAG 86 585 67 Antisense
AGACAACAGCTGTGGACCAAGACAC 292 71 83 Antisense
CAAGACACAACCGAGCTCATGGCAC 479 185 100 Antisense
GCTCATGGCACGTTTCTTTGTCAGC 422 301 114 Antisense
GCACGTTTCTTTGTCAGCCAAGGAA 698 279 121 Antisense
GATGAGCAGACGAGGGCTATGGACA 608 411 226 Antisense
AGACTGATGGGCCACTCAGTGCTAC 416 71 290 Antisense
AATATATTGCGCTTTCCATTCACTA 14 175 344 Antisense
TGCGGAAGTTGATACTCGGGACATA 222 581 407 Antisense
Sequence Source Affymetrix Proprietary Database