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[178370_at]

Description F14F8.3 /REP_DB=WormBase Gene ID /WP=CE18587 /TR=Q9XU34 /GB=CAB07188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 18      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 10.3
(-2.4)
A 		7.9
(-2.6)
A 		3.9
(-3)
A 		66
(3)
A 		62
B 11.2
(-2)
A 		46
(3)
A 		19.6
(-0.8)
A 		4.3
(-3)
A 		42
C 8.1
(-2.6)
A 		4
(-3)
A 		14
(-2.1)
A 		70.9
(3)
A 		67
avr 9.9
(-3) 		19.3
(-1.5) 		12.5
(-2.6) 		47.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 40.8
(3)
A 		4.3
(-2.9)
A 		9.7
(-2)
A 		3.4
(-3)
A 		19.7
(-0.4)
A 		20.8
(-0.2)
A 		37
B 6.5
(-2.3)
A 		36.4
(3)
A 		3.6
(-2.8)
A 		3.3
(-2.8)
A 		3
(-2.9)
A 		2.3
(-3)
A 		34
C 1.4
(-2.5)
A 		4.2
(2.2)
A 		2.2
(-1.2)
A 		4.3
(2.3)
A 		1.1
(-3)
A 		4.7
(3)
A 		4
avr 16.2
(3) 		15
(2.4) 		5.2
(-2.3) 		3.7
(-3) 		7.9
(-1) 		9.3
(-0.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.7
(-1.1)
A 		1.7
(-2.5)
A 		1
(-3)
A 		9.7
(3)
A 		9
B 3.6
(-1.5)
A 		11.4
(3)
A 		4.5
(-0.9)
A 		0.9
(-3)
A 		11
C 2.7
(-2.2)
A 		1.2
(-3)
A 		4.9
(-0.9)
A 		12
(3)
A 		11
avr 3.3
(-3) 		4.8
(-0.9) 		3.5
(-2.7) 		7.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.5
(3)
A 		1.5
(-2.5)
A 		2.1
(-1.9)
A 		0.9
(-3)
A 		5.9
(1.5)
A 		5.1
(0.8)
A 		7
B 2.3
(-2.3)
A 		12.1
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		11
C 0.5
(-2.1)
A 		1.3
(1.6)
A 		0.6
(-1.6)
A 		0.9
(-0.2)
A 		0.3
(-3)
A 		1.6
(3)
A 		1
avr 3.4
(0.7) 		5
(3) 		1.2
(-2.6) 		0.9
(-3) 		2.5
(-0.7) 		2.5
(-0.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178370_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14252
Sequence Type Exemplar sequence
Representative Public ID F14F8.3 NCBI
Target Description F14F8.3 /REP_DB=WormBase Gene ID /WP=CE18587 /TR=Q9XU34 /GB=CAB07188.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074820 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-1) (srz-1) mRNA, complete cds. 11/11 None
GENEFINDER00000022536 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16678435:16680133:1 11/11 None
F14F8.3 ENSEMBL cdna:known chromosome:CEL140:V:16678435:16680133:1 gene:F14F8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16678434-16680133(+) 91.37 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-1
Ensembl F14F8.3
Entrez Gene 184477 Entrez gene
SwissProt Q9XU34 EMBL-EBI
WormBase CE18587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07188 Hypothetical protein F14F8.3 [Caenorhabditis elegans] ref|NP_507221.1| Serpentine Receptor, class Z family member (srz-1) [Caenorhabditis elegans] 1.0E-146
blast T20915 hypothetical protein F14F8.2 - Caenorhabditis elegans 7.0E-81
blast CAE74803 Hypothetical protein CBG22634 [Caenorhabditis briggsae] 1.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.5E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507221.1 7 24-46,69-91,101-123,152-174,184-206,229-251,261-283
F14F8.3 7 24-46,69-91,101-123,152-174,184-206,229-251,261-283
GENEFINDER00000022536 7 24-46,69-91,101-123,152-174,184-206,229-251,261-283
Sequence
Target Sequence 
>C. ELEGANS:178370_AT
gagccactggtgacttttgggcagaaaaccaccaacaaaataatttacacccttcatttt
ctatttattcttacgcatttgggactattgatccttgattgggctaattatcaaggttca
cttagtcagatcccaacattatattatctttgttattttatatttctcaacattatacag
ataacatcagcaattttgtatatcccaatggtgatgaaaattcgaagttttgcacatttg
gcgtcctcaaggacttatcaacctcaaaactttattttgtatcagacattgttcatttca
ggctctaaatcttctcatatttgggctcttggccttgtcttctgggctgatttttcagtg
atacattttttcataatttgcggtggatttgatttgttatcaactcctgtattaatccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCACTGGTGACTTTTGGGCAGA 328 385 427 Antisense
TTTACACCCTTCATTTTCTATTTAT 406 673 470 Antisense
GGGACTATTGATCCTTGATTGGGCT 363 495 507 Antisense
GGTTCACTTAGTCAGATCCCAACAT 354 505 541 Antisense
TGCACATTTGGCGTCCTCAAGGACT 311 575 657 Antisense
GGACTTATCAACCTCAAAACTTTAT 85 509 677 Antisense
CAGACATTGTTCATTTCAGGCTCTA 416 205 709 Antisense
TTCAGGCTCTAAATCTTCTCATATT 131 689 723 Antisense
ATATTTGGGCTCTTGGCCTTGTCTT 44 19 743 Antisense
GCCTTGTCTTCTGGGCTGATTTTTC 596 281 758 Antisense
GTTATCAACTCCTGTATTAATCCAA 143 447 822 Antisense
Sequence Source Affymetrix Proprietary Database