[Home] | [Total List]

[178368_at]

Description C49A1.1 /REP_DB=WormBase Gene ID /WP=CE08827 /TR=O17675 /GB=CAB05709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 22
(-2)
A 		7.5
(-3)
A 		37.8
(-0.9)
A 		95.8
(3)
P 		88
B 42.1
(3)
A 		11.8
(-3)
A 		28.7
(0.3)
A 		35.3
(1.7)
A 		30
C 57.9
(3)
A 		42.9
(1)
A 		13.4
(-3)
A 		53.8
(2.4)
A 		45
avr 40.7
(-0.1) 		20.7
(-3) 		26.6
(-2.1) 		61.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 49.2
(3)
A 		32.6
(0.7)
A 		17.6
(-1.5)
A 		46.3
(2.6)
A 		34.1
(0.9)
A 		6.6
(-3)
A 		43
B 7.6
(-3)
A 		37.4
(3)
P 		35.4
(2.6)
A 		33.4
(2.2)
P 		37.1
(2.9)
P 		21.4
(-0.2)
A 		30
C 10.1
(-2.6)
A 		70
(3)
A 		36.7
(-0.1)
A 		5.4
(-3)
A 		7.2
(-2.8)
A 		22.9
(-1.4)
A 		65
avr 22.3
(-1.9) 		46.7
(3) 		29.9
(-0.4) 		28.4
(-0.7) 		26.1
(-1.2) 		17
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8
(0.1)
A 		1.6
(-3)
A 		9.9
(1)
A 		14
(3)
P 		12
B 13.4
(3)
A 		2.9
(-3)
A 		6.6
(-0.9)
A 		7.5
(-0.4)
A 		11
C 19.2
(3)
A 		12.3
(0.1)
A 		4.7
(-3)
A 		9.1
(-1.2)
A 		15
avr 13.5
(3) 		5.6
(-3) 		7.1
(-1.9) 		10.2
(0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.1
(1.5)
A 		11.6
(2.9)
A 		3.8
(-1.7)
A 		11.7
(3)
A 		10.3
(2.2)
A 		1.6
(-3)
A 		10
B 2.7
(-3)
A 		12.4
(1.7)
P 		8.6
(-0.1)
A 		8.8
(-0)
P 		15.1
(3)
P 		8
(-0.4)
A 		12
C 3.7
(-2.2)
A 		21.3
(3)
A 		9.3
(-0.6)
A 		1.1
(-3)
A 		2.3
(-2.6)
A 		7.7
(-1)
A 		20
avr 5.2
(-3) 		15.1
(3) 		7.2
(-1.8) 		7.2
(-1.8) 		9.2
(-0.6) 		5.8
(-2.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178368_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2128
Sequence Type Exemplar sequence
Representative Public ID C49A1.1 NCBI
Target Description C49A1.1 /REP_DB=WormBase Gene ID /WP=CE08827 /TR=O17675 /GB=CAB05709.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061080 NCBI Caenorhabditis elegans C49A1.1 (C49A1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000008665 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14221861:14224172:1 11/11 None
SNAP00000008654 ENSEMBL cdna:SNAP chromosome:CEL140:I:14222310:14224006:1 11/11 None
C49A1.1 ENSEMBL cdna:known chromosome:CEL140:I:14222310:14223908:1 gene:C49A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14222240-14223839(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A1.1
Entrez Gene 183585 Entrez gene
SwissProt O17675 EMBL-EBI
WormBase CE08827 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05709 Hypothetical protein C49A1.1 [Caenorhabditis elegans] ref|NP_493481.1| C49A1.1 [Caenorhabditis elegans] 1.0E-133
blast CAB05709 Hypothetical protein C49A1.1 [Caenorhabditis elegans] ref|NP_493481.1| C49A1.1 [Caenorhabditis elegans] 1.0E-129
blast CAB05709 Hypothetical protein C49A1.1 [Caenorhabditis elegans] ref|NP_493481.1| C49A1.1 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008665 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:178368_AT
aatctcaccgagacagcttaaccttctctccttactaataggaccctctaacagtgatca
ggagattccacgtgacacggttgctgtttcctgggtttatgtaggattcgagtttgggga
gagctgtgagcaatttggagcaactgatgagcagctgagaggtcattttgagtatcaaat
gatttgcacaaatgttcaatgtatttattttgtggaggatgggaagaagcgacggatggc
aggtgttacttggtatcttagaaatgatgaaaaatcaaaaaatcacgaggattacaacat
gattgctatctacgaaacaataagagagaagagatttgaagaagtgcagaaaatcagaaa
attagaaaaagaagaagctctccgccgaggtggatggctcggggagcccactgacgagta
cacctctacaatattctcacatttgaagcttctcactctgaaagacggaagattggcagt
ttttgcctgtaatgctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTCACCGAGACAGCTTAACCTT 585 169 144 Antisense
TTAACCTTCTCTCCTTACTAATAGG 613 671 161 Antisense
AATAGGACCCTCTAACAGTGATCAG 238 173 180 Antisense
GATTCCACGTGACACGGTTGCTGTT 209 433 207 Antisense
GGTTGCTGTTTCCTGGGTTTATGTA 527 507 222 Antisense
GAAGCGACGGATGGCAGGTGTTACT 90 339 369 Antisense
GAGGTGGATGGCTCGGGGAGCCCAC 148 403 530 Antisense
CCACTGACGAGTACACCTCTACAAT 415 273 551 Antisense
ACACCTCTACAATATTCTCACATTT 696 109 563 Antisense
TTGAAGCTTCTCACTCTGAAAGACG 163 705 586 Antisense
GGCAGTTTTTGCCTGTAATGCTGAT 508 535 618 Antisense
Sequence Source Affymetrix Proprietary Database