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[178367_at]

Description K08H2.2 /REP_DB=WormBase Gene ID /WP=CE06160 /TR=Q21366 /GB=CAA94148.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 58.9
(2.3)
A 		65.1
(3)
A 		9.3
(-3)
A 		20.5
(-1.8)
A 		56
B 10.5
(-2.8)
A 		70.8
(2)
A 		7.7
(-3)
A 		83.9
(3)
A 		76
C 49.4
(-2.8)
A 		54.1
(-2.4)
A 		46.4
(-3)
A 		121.3
(3)
P 		75
avr 39.6
(-0.9) 		63.3
(1.7) 		21.1
(-3) 		75.2
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 63.2
(2.5)
A 		68.3
(3)
A 		22.6
(-1.3)
A 		4.8
(-3)
A 		7.5
(-2.7)
A 		34.8
(-0.2)
A 		64
B 8.7
(-3)
A 		58
(3)
A 		8.9
(-3)
A 		41.1
(0.9)
A 		51.2
(2.2)
A 		42
(1.1)
A 		49
C 26.7
(-3)
A 		47.8
(0.7)
A 		60.7
(3)
A 		34
(-1.7)
A 		32.9
(-1.9)
A 		46.8
(0.5)
A 		34
avr 32.9
(-1.8) 		58
(3) 		30.7
(-2.2) 		26.6
(-3) 		30.5
(-2.3) 		41.2
(-0.2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.4
(3)
A 		14.1
(0.7)
A 		2.4
(-3)
A 		3
(-2.8)
A 		19
B 3.4
(-2.4)
A 		17.5
(2.9)
A 		1.8
(-3)
A 		17.9
(3)
A 		16
C 16.3
(-2)
A 		15.5
(-3)
A 		16.2
(-2.1)
A 		20.4
(3)
P 		5
avr 13.7
(1.7) 		15.7
(3) 		6.8
(-3) 		13.8
(1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.7
(-0.3)
A 		24.3
(3)
A 		4.9
(-2)
A 		1.2
(-3)
A 		2.3
(-2.7)
A 		8.5
(-1.1)
A 		23
B 3
(-2.7)
A 		19.3
(2.5)
A 		2.2
(-3)
A 		10.9
(-0.2)
A 		20.8
(3)
A 		15.6
(1.3)
A 		19
C 9.9
(-0.9)
A 		14.6
(2.3)
A 		15.4
(2.8)
A 		6.8
(-3)
A 		10.6
(-0.4)
A 		15.7
(3)
A 		9
avr 8.2
(-2.1) 		19.4
(3) 		7.5
(-2.5) 		6.3
(-3) 		11.2
(-0.8) 		13.3
(0.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17508
Sequence Type Exemplar sequence
Representative Public ID K08H2.2 NCBI
Target Description K08H2.2 /REP_DB=WormBase Gene ID /WP=CE06160 /TR=Q21366 /GB=CAA94148.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077794 NCBI Caenorhabditis elegans K08H2.2 (K08H2.2) mRNA, complete cds. 11/11 None
SNAP00000000970 ENSEMBL cdna:SNAP chromosome:CEL140:X:13234198:13235146:-1 11/11 None
GENEFINDER00000000983 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13234198:13234877:-1 11/11 None
K08H2.2 ENSEMBL cdna:known chromosome:CEL140:X:13234198:13234877:-1 gene:K08H2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13234197-13234877(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08H2.2
Entrez Gene 187175 Entrez gene
SwissProt Q21366 EMBL-EBI
WormBase CE06160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94148 Hypothetical protein K08H2.2 [Caenorhabditis elegans] ref|NP_510195.1| K08H2.2 [Caenorhabditis elegans] 1.0E-74
blast CAA94148 Hypothetical protein K08H2.2 [Caenorhabditis elegans] ref|NP_510195.1| K08H2.2 [Caenorhabditis elegans] 2.0E-74
blast CAA94150 Hypothetical protein K08H2.3 [Caenorhabditis elegans] ref|NP_510196.1| K08H2.3 [Caenorhabditis elegans] 6.0E-18
blast CAB01710 Hypothetical protein F45H11.3 [Caenorhabditis elegans] ref|NP_492718.2| F45H11.3 [Caenorhabditis elegans] 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:178367_AT
atgtcttcgttttctgtttttgttgaagatgaggaatccagcaaccaactcatccaggaa
gccgcagtagccagcaaaattgcgatggacctagttgtacgatcttcggggcgcaacggt
aacaaagttgaattggctgaaaagatgcttgccgcagcaatggcagcttctgccagtatc
tatgttaacgccataaaaagaaaagaagaagagaaaaaattgaaggaggaggaagaaatg
cggcagaaggcagttcttgaagagcacaacaaattgagtcccgaattaaaaaagatggtg
gatttaatgtacgcttccatcaagccccacgtcgacgtctttccggatgcaccacagcca
gaagatatcgcgattccaacgggtggacttgcaaaatgtgaatgctcaccaggctgtacc
aaagagcttcctcaaccagcttatcaaataatcaagaacgaagagcaagacaaacgctgg
aatgtgagaaaagagaccagagtgataatagttccaaaacccagtagtgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTCGTTTTCTGTTTTTGTTG 191 49 13 Antisense
CCAGCAACCAACTCATCCAGGAAGC 416 263 50 Antisense
GGAAGCCGCAGTAGCCAGCAAAATT 87 531 69 Antisense
TGGACCTAGTTGTACGATCTTCGGG 572 545 98 Antisense
TGCCGCAGCAATGGCAGCTTCTGCC 593 583 162 Antisense
AGCTTCTGCCAGTATCTATGTTAAC 385 79 177 Antisense
GGATGCACCACAGCCAGAAGATATC 90 513 357 Antisense
AAGATATCGCGATTCCAACGGGTGG 266 155 374 Antisense
TGTGAATGCTCACCAGGCTGTACCA 100 557 409 Antisense
GGCTGTACCAAAGAGCTTCCTCAAC 104 537 424 Antisense
TAGTTCCAAAACCCAGTAGTGCTGA 654 645 521 Antisense
Sequence Source Affymetrix Proprietary Database